Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40408
(539 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC6G9.09c |rpl24||60S ribosomal protein L24|Schizosaccharomyce... 62 7e-11
SPCC330.14c |rpl2402|rpl24-2|60S ribosomal protein L24|Schizosac... 62 7e-11
SPAC22E12.13c |rpl2403|rpl24-3|60S ribosomal protein L24-3 |Schi... 48 9e-07
SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces ... 27 2.3
SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces pombe... 27 2.3
SPBC19F8.05 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 26 3.1
SPCC1840.05c |||phosphomannomutase |Schizosaccharomyces pombe|ch... 26 4.1
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb... 25 7.2
SPBC16E9.17c |rem1||meiosis-specific cyclin Rem1|Schizosaccharom... 25 7.2
SPAPB24D3.02c |||amino acid permease, unknown 3|Schizosaccharomy... 25 9.5
SPBC337.07c |||carboxypeptidase |Schizosaccharomyces pombe|chr 2... 25 9.5
>SPAC6G9.09c |rpl24||60S ribosomal protein L24|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 149
Score = 61.7 bits (143), Expect = 7e-11
Identities = 24/53 (45%), Positives = 37/53 (69%)
Frame = -2
Query: 424 IKLCAYSGYKIYPGNGETMVKVDGKTNTKLNSKCEAAHLMRRNPRKVTWTVLY 266
+++C++SG K+YPG G V+ D K +N K E+ L R+NPR+++WTVLY
Sbjct: 3 VEVCSFSGSKVYPGAGRLFVRGDNKVFRFVNKKSESLFLQRKNPRRLSWTVLY 55
Score = 29.9 bits (64), Expect = 0.25
Identities = 17/41 (41%), Positives = 19/41 (46%)
Frame = -1
Query: 254 KKGQEEEXXXXXXXXXXXXXXAIVGASLSDIMAKRNMKPEV 132
KKG EE IVGA+L I KRN +PEV
Sbjct: 60 KKGISEEHAKKRTRRTVKHQRGIVGANLDVIKEKRNQRPEV 100
>SPCC330.14c |rpl2402|rpl24-2|60S ribosomal protein
L24|Schizosaccharomyces pombe|chr 3|||Manual
Length = 149
Score = 61.7 bits (143), Expect = 7e-11
Identities = 24/53 (45%), Positives = 37/53 (69%)
Frame = -2
Query: 424 IKLCAYSGYKIYPGNGETMVKVDGKTNTKLNSKCEAAHLMRRNPRKVTWTVLY 266
+++C++SG K+YPG G V+ D K +N K E+ L R+NPR+++WTVLY
Sbjct: 3 VEVCSFSGSKVYPGAGRLFVRGDNKVFRFVNKKSESLFLQRKNPRRLSWTVLY 55
Score = 29.9 bits (64), Expect = 0.25
Identities = 17/41 (41%), Positives = 19/41 (46%)
Frame = -1
Query: 254 KKGQEEEXXXXXXXXXXXXXXAIVGASLSDIMAKRNMKPEV 132
KKG EE IVGA+L I KRN +PEV
Sbjct: 60 KKGISEEHAKKRTRRTVKHQRGIVGANLDVIKEKRNQRPEV 100
>SPAC22E12.13c |rpl2403|rpl24-3|60S ribosomal protein L24-3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 192
Score = 48.0 bits (109), Expect = 9e-07
Identities = 21/53 (39%), Positives = 27/53 (50%)
Frame = -2
Query: 424 IKLCAYSGYKIYPGNGETMVKVDGKTNTKLNSKCEAAHLMRRNPRKVTWTVLY 266
+ C + +YPG+G V+ D K SKC M+RNPRKV WT Y
Sbjct: 3 VHTCYFCSGPVYPGHGIMFVRNDSKVFRFCRSKCHKNFKMKRNPRKVAWTKAY 55
>SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 2344
Score = 26.6 bits (56), Expect = 2.3
Identities = 10/22 (45%), Positives = 12/22 (54%)
Frame = +1
Query: 220 RFFACSSSWPFLTCACTGQSML 285
R FAC W FL CT ++ L
Sbjct: 2147 RSFACKKRWGFLQMPCTRENFL 2168
>SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 317
Score = 26.6 bits (56), Expect = 2.3
Identities = 21/75 (28%), Positives = 30/75 (40%)
Frame = +1
Query: 94 FAALMACSLCALRTSGFILRLAIMSLSEAPTIARWNFWVLLVRFFACSSSWPFLTCACTG 273
+ L ACS C + TS I S S AP++ F SSS P + + +
Sbjct: 105 YFTLQACSTCTISTSSLSYSGTISSTSIAPSMIGTR--TSSSYFITSSSSTPSSSSSSSS 162
Query: 274 QSMLLYEDSSSSNGR 318
S SSS+ +
Sbjct: 163 SSPSSSSSKSSSSSK 177
>SPBC19F8.05 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 218
Score = 26.2 bits (55), Expect = 3.1
Identities = 11/18 (61%), Positives = 12/18 (66%)
Frame = -2
Query: 433 SRAIKLCAYSGYKIYPGN 380
SR IK C SGY I+P N
Sbjct: 3 SRCIKRCYRSGYMIFPPN 20
>SPCC1840.05c |||phosphomannomutase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 587
Score = 25.8 bits (54), Expect = 4.1
Identities = 9/12 (75%), Positives = 11/12 (91%)
Frame = -2
Query: 412 AYSGYKIYPGNG 377
AY+GYK+Y GNG
Sbjct: 154 AYNGYKVYWGNG 165
>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2685
Score = 25.0 bits (52), Expect = 7.2
Identities = 8/22 (36%), Positives = 14/22 (63%)
Frame = -3
Query: 405 VDTKYIQAMARPWLKWMEKQTQ 340
V+ K+IQ + + W+KW+ Q
Sbjct: 137 VEQKWIQFLHKSWMKWLHISIQ 158
>SPBC16E9.17c |rem1||meiosis-specific cyclin
Rem1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 402
Score = 25.0 bits (52), Expect = 7.2
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +1
Query: 220 RFFACSSSWPFLTCACTGQSMLLYEDSSSS 309
RF + +S TCA TGQS+L E+ S++
Sbjct: 308 RFSSLRASQLVATCAYTGQSILQEENWSNT 337
>SPAPB24D3.02c |||amino acid permease, unknown 3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 543
Score = 24.6 bits (51), Expect = 9.5
Identities = 16/57 (28%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
Frame = -2
Query: 514 WQIFIPLRAGTHYNPKKKKMNITVXIYSRAIKLCAYSGYKIYPG-NGETMVKVDGKT 347
W + + L ++ NP K +MN + + + C GY P G+T K KT
Sbjct: 461 WFMALMLLFPSYQNPNKVEMNWAIVVLGFTVFFCV--GYYYLPKYGGKTFFKGPVKT 515
>SPBC337.07c |||carboxypeptidase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 497
Score = 24.6 bits (51), Expect = 9.5
Identities = 9/24 (37%), Positives = 13/24 (54%)
Frame = +2
Query: 350 FSIHFNHGLAIAWIYFVSTIGAKF 421
F H+ G AI W+YF + + F
Sbjct: 432 FHKHYLPGTAIDWVYFAADVAWPF 455
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,879,854
Number of Sequences: 5004
Number of extensions: 37261
Number of successful extensions: 99
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 221892220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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