Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40408
         (539 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1123 + 34671365-34671883,34672366-34672625,34673045-346731...    54   6e-08
05_05_0279 - 23794964-23795111,23795486-23795634,23796120-237962...    53   2e-07
07_01_0849 + 6896930-6896996,6897453-6897474,6897615-6897690,689...    52   3e-07
07_01_1199 + 11391638-11391718,11393477-11393590,11393690-113938...    47   8e-06
01_05_0105 - 18155135-18155297,18155379-18155515,18155621-181557...    32   0.25 
05_03_0331 + 12488005-12488454,12488561-12489505                       27   9.6  
04_04_1400 - 33259716-33260069,33260172-33260219,33260471-332605...    27   9.6  
01_06_1352 + 36521362-36521565,36521659-36522009,36522102-365223...    27   9.6  

>01_06_1123 + 34671365-34671883,34672366-34672625,34673045-34673143,
            34673237-34675178,34675588-34675658,34676158-34676307,
            34676963-34677038,34677131-34677232,34677707-34677855,
            34678214-34678364
          Length = 1172

 Score = 54.4 bits (125), Expect = 6e-08
 Identities = 22/61 (36%), Positives = 34/61 (55%)
 Frame = -2

Query: 448  TVXIYSRAIKLCAYSGYKIYPGNGETMVKVDGKTNTKLNSKCEAAHLMRRNPRKVTWTVL 269
            ++ ++    +LC +SG KIYPG G   ++ D +     NSKC+     R  P K+TWT +
Sbjct: 1007 SISLWLEGTELCRFSGQKIYPGKGIRFIRADSQVFLFANSKCKRYFHNRLKPAKLTWTAM 1066

Query: 268  Y 266
            Y
Sbjct: 1067 Y 1067


>05_05_0279 -
           23794964-23795111,23795486-23795634,23796120-23796221,
           23796309-23796384,23796578-23796588
          Length = 161

 Score = 52.8 bits (121), Expect = 2e-07
 Identities = 22/52 (42%), Positives = 30/52 (57%)
 Frame = -2

Query: 421 KLCAYSGYKIYPGNGETMVKVDGKTNTKLNSKCEAAHLMRRNPRKVTWTVLY 266
           +LC +SG KIYPG G   ++ D +     NSKC+     R  P K+TWT +Y
Sbjct: 6   ELCRFSGQKIYPGKGIRFIRADSQVFLFANSKCKRYFHNRLKPAKLTWTAMY 57


>07_01_0849 +
           6896930-6896996,6897453-6897474,6897615-6897690,
           6897775-6897876,6898156-6898304,6898637-6898784
          Length = 187

 Score = 52.0 bits (119), Expect = 3e-07
 Identities = 22/52 (42%), Positives = 30/52 (57%)
 Frame = -2

Query: 421 KLCAYSGYKIYPGNGETMVKVDGKTNTKLNSKCEAAHLMRRNPRKVTWTVLY 266
           +LC +SG KIYPG G   ++ D +     NSKC+     R  P K+TWT +Y
Sbjct: 32  ELCRFSGAKIYPGKGIRFIRADSQVFLFSNSKCKRYFHNRLKPAKLTWTAMY 83


>07_01_1199 +
           11391638-11391718,11393477-11393590,11393690-11393826,
           11393905-11394064
          Length = 163

 Score = 47.2 bits (107), Expect = 8e-06
 Identities = 21/53 (39%), Positives = 28/53 (52%)
 Frame = -2

Query: 424 IKLCAYSGYKIYPGNGETMVKVDGKTNTKLNSKCEAAHLMRRNPRKVTWTVLY 266
           ++ C +    +YPG+G   V+ D K      SKC     M+RNPRKV WT  Y
Sbjct: 3   LEKCWFCSSTVYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAY 55


>01_05_0105 -
           18155135-18155297,18155379-18155515,18155621-18155734,
           18155768-18155806,18156838-18156993
          Length = 202

 Score = 32.3 bits (70), Expect = 0.25
 Identities = 13/22 (59%), Positives = 14/22 (63%)
 Frame = -2

Query: 331 SKCEAAHLMRRNPRKVTWTVLY 266
           SKC     M+RNPRKV WT  Y
Sbjct: 72  SKCHKNFKMKRNPRKVKWTKAY 93


>05_03_0331 + 12488005-12488454,12488561-12489505
          Length = 464

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 16/46 (34%), Positives = 20/46 (43%)
 Frame = +2

Query: 218 YVSLLVLPLGPF*LAPVQDSPCYFTRIPPHQMGGFTF*IQFCVCFS 355
           Y  LL  P  P   A V D P  F ++     GGF F +  C C +
Sbjct: 127 YDMLLCEPESP--TADVVDRPLLFIQVTRLACGGFVFGMHICHCMA 170


>04_04_1400 -
           33259716-33260069,33260172-33260219,33260471-33260596,
           33260850-33260900,33260963-33261055,33261217-33261272,
           33261465-33261522,33262306-33262365,33262513-33262623,
           33263368-33263949,33264026-33264097
          Length = 536

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 11/31 (35%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = -2

Query: 355 GKTNTKLNSKCEAAHL-MRRNPRKVTWTVLY 266
           G    +L+S   A H+ +RRNP+ + W ++Y
Sbjct: 469 GSAIRQLDSIFSAGHIFLRRNPKALVWAMVY 499


>01_06_1352 +
           36521362-36521565,36521659-36522009,36522102-36522393,
           36522491-36522598,36522685-36522821
          Length = 363

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -2

Query: 508 IFIPLRAGTHYNPKKKKMNITVXIYSRAIK 419
           +FIP +AG    PKKK    TV + +R ++
Sbjct: 266 VFIPRQAGAPAEPKKKPSCSTVLLPARVVQ 295


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,099,427
Number of Sequences: 37544
Number of extensions: 241087
Number of successful extensions: 449
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 442
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 449
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1198356516
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)