Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40407
         (669 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A6LRH5 Cluster: Binding-protein-dependent transport sys...    36   1.2  
UniRef50_A0MNZ0 Cluster: NADPH oxidoreductase; n=1; Bombyx mori|...    34   2.7  
UniRef50_Q86UT8 Cluster: Coiled-coil domain-containing protein 8...    34   3.6  
UniRef50_Q3J0U1 Cluster: Putative calcium-binding EF-hand domain...    33   4.7  

>UniRef50_A6LRH5 Cluster: Binding-protein-dependent transport
           systems inner membrane component; n=1; Clostridium
           beijerinckii NCIMB 8052|Rep: Binding-protein-dependent
           transport systems inner membrane component - Clostridium
           beijerinckii NCIMB 8052
          Length = 275

 Score = 35.5 bits (78), Expect = 1.2
 Identities = 19/90 (21%), Positives = 45/90 (50%)
 Frame = -3

Query: 292 MNTLLFLQYSIVINFSFV*YRICIVSRNQRWVNELVAHLVLSGYRGP*RSTT*MPLTTLR 113
           +N+LL+   S++I    V     +++RN++ +N  + + +LSG   P  +   M +    
Sbjct: 72  LNSLLYATCSVLIIVIVVAAAAFVIARNRKGINNFIYYFILSGIAIPINNVALMKVLQAL 131

Query: 112 QRVSYKLSVFTAQTSKSLKVN*F*SINFVN 23
             V+ +L +     + ++ ++ F S  F++
Sbjct: 132 NLVNTRLGIILVYAAINIPLSLFLSYGFIS 161


>UniRef50_A0MNZ0 Cluster: NADPH oxidoreductase; n=1; Bombyx
           mori|Rep: NADPH oxidoreductase - Bombyx mori (Silk moth)
          Length = 191

 Score = 34.3 bits (75), Expect = 2.7
 Identities = 14/18 (77%), Positives = 15/18 (83%)
 Frame = -3

Query: 205 RWVNELVAHLVLSGYRGP 152
           RWV+EL AHLVLSGY  P
Sbjct: 158 RWVDELTAHLVLSGYWSP 175


>UniRef50_Q86UT8 Cluster: Coiled-coil domain-containing protein 84;
           n=19; Tetrapoda|Rep: Coiled-coil domain-containing
           protein 84 - Homo sapiens (Human)
          Length = 332

 Score = 33.9 bits (74), Expect = 3.6
 Identities = 14/45 (31%), Positives = 25/45 (55%)
 Frame = +3

Query: 348 RRCYRIVDACIIRK*YYLGDSIALFGFIL*HMAFPRHQKLSRQIW 482
           R C+ +   C +R+    G+   L+G +L H+A P H+K + + W
Sbjct: 62  RCCWCLCCGCEVREHLSHGNLTVLYGGLLEHLASPEHKKATNKFW 106


>UniRef50_Q3J0U1 Cluster: Putative calcium-binding EF-hand domain
           protein; n=3; Rhodobacter sphaeroides|Rep: Putative
           calcium-binding EF-hand domain protein - Rhodobacter
           sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 /
           DSM158)
          Length = 218

 Score = 33.5 bits (73), Expect = 4.7
 Identities = 13/22 (59%), Positives = 15/22 (68%)
 Frame = +1

Query: 151 MGPGNHLTPGGPRARSPIFDFD 216
           MGPG  + PG  R R P+FDFD
Sbjct: 72  MGPGAGMGPGAGRGRGPMFDFD 93


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 638,638,229
Number of Sequences: 1657284
Number of extensions: 12903349
Number of successful extensions: 24831
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 23842
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24828
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 51239674196
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)