Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40407
         (669 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.           24   1.3  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    23   2.3  
AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase ...    22   4.0  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    22   4.0  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    22   4.0  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    21   9.1  

>U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.
          Length = 425

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = -2

Query: 374 RINNPITSSNQW*IFNGKKGQN 309
           R N P TS+N+W   NG    N
Sbjct: 365 RNNQPSTSNNRWHNNNGNNSNN 386


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10
           protein.
          Length = 2700

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = -3

Query: 235 YRICIVSRNQRWV 197
           Y IC   RNQRW+
Sbjct: 907 YEICNRIRNQRWI 919


>AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase
           protein.
          Length = 677

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 7/23 (30%), Positives = 15/23 (65%)
 Frame = +1

Query: 385 ANNITSETPLHFLALFSDIWLFL 453
           A+++ S  P+H  +  + IW++L
Sbjct: 114 ASSVGSRNPIHTSSYMTGIWVWL 136


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 7/23 (30%), Positives = 15/23 (65%)
 Frame = +1

Query: 385 ANNITSETPLHFLALFSDIWLFL 453
           A+++ S  P+H  +  + IW++L
Sbjct: 347 ASSVGSRNPIHTSSYMTGIWVWL 369


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 7/23 (30%), Positives = 15/23 (65%)
 Frame = +1

Query: 385 ANNITSETPLHFLALFSDIWLFL 453
           A+++ S  P+H  +  + IW++L
Sbjct: 347 ASSVGSRNPIHTSSYMTGIWVWL 369


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 21.0 bits (42), Expect = 9.1
 Identities = 12/28 (42%), Positives = 14/28 (50%), Gaps = 1/28 (3%)
 Frame = +1

Query: 154 GPGNHLTPGGPRARSPIFDFDLQCK-CD 234
           G GN+  PGGP +        L CK CD
Sbjct: 530 GSGNNQPPGGPSSHVSAV---LTCKVCD 554


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 160,718
Number of Sequences: 336
Number of extensions: 3782
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17385535
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)