Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40407
         (669 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC126471-1|AAI26472.1|  332|Homo sapiens coiled-coil domain cont...    34   0.53 
BC126469-1|AAI26470.1|  332|Homo sapiens coiled-coil domain cont...    34   0.53 
AB094093-1|BAC76047.1|  332|Homo sapiens DLNB14 protein.               34   0.53 

>BC126471-1|AAI26472.1|  332|Homo sapiens coiled-coil domain
           containing 84 protein.
          Length = 332

 Score = 33.9 bits (74), Expect = 0.53
 Identities = 14/45 (31%), Positives = 25/45 (55%)
 Frame = +3

Query: 348 RRCYRIVDACIIRK*YYLGDSIALFGFIL*HMAFPRHQKLSRQIW 482
           R C+ +   C +R+    G+   L+G +L H+A P H+K + + W
Sbjct: 62  RCCWCLCCGCEVREHLSHGNLTVLYGGLLEHLASPEHKKATNKFW 106


>BC126469-1|AAI26470.1|  332|Homo sapiens coiled-coil domain
           containing 84 protein.
          Length = 332

 Score = 33.9 bits (74), Expect = 0.53
 Identities = 14/45 (31%), Positives = 25/45 (55%)
 Frame = +3

Query: 348 RRCYRIVDACIIRK*YYLGDSIALFGFIL*HMAFPRHQKLSRQIW 482
           R C+ +   C +R+    G+   L+G +L H+A P H+K + + W
Sbjct: 62  RCCWCLCCGCEVREHLSHGNLTVLYGGLLEHLASPEHKKATNKFW 106


>AB094093-1|BAC76047.1|  332|Homo sapiens DLNB14 protein.
          Length = 332

 Score = 33.9 bits (74), Expect = 0.53
 Identities = 14/45 (31%), Positives = 25/45 (55%)
 Frame = +3

Query: 348 RRCYRIVDACIIRK*YYLGDSIALFGFIL*HMAFPRHQKLSRQIW 482
           R C+ +   C +R+    G+   L+G +L H+A P H+K + + W
Sbjct: 62  RCCWCLCCGCEVREHLSHGNLTVLYGGLLEHLASPEHKKATNKFW 106


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 94,131,527
Number of Sequences: 237096
Number of extensions: 2020331
Number of successful extensions: 3650
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2821
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3646
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7591280850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)