Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40407
         (669 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70783-11|CAA94860.2|  782|Caenorhabditis elegans Hypothetical p...    29   3.9  
Z92973-8|CAO82049.1|  517|Caenorhabditis elegans Hypothetical pr...    28   6.9  
Z81554-6|CAO82038.1|  517|Caenorhabditis elegans Hypothetical pr...    28   6.9  

>Z70783-11|CAA94860.2|  782|Caenorhabditis elegans Hypothetical
           protein ZK856.12 protein.
          Length = 782

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 15/41 (36%), Positives = 20/41 (48%)
 Frame = +3

Query: 306 YILSLFSIKNLPLIRRCYRIVDACIIRK*YYLGDSIALFGF 428
           ++   FSIK+ P    C RIV    IRK Y  G +  +  F
Sbjct: 196 FVSDQFSIKDYPCALHCARIVGISAIRKSYVSGMNQFILNF 236


>Z92973-8|CAO82049.1|  517|Caenorhabditis elegans Hypothetical
           protein Y6G8.8 protein.
          Length = 517

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = +1

Query: 268 TVEKVMYSFNNADTFCPFFPLKIYH*LEDVIGL 366
           T E+++  F  ++ FC  F L+ Y  ++DVIG+
Sbjct: 124 TREQLLIHFVRSEVFCDKFILQCYFNVDDVIGV 156


>Z81554-6|CAO82038.1|  517|Caenorhabditis elegans Hypothetical
           protein Y6G8.8 protein.
          Length = 517

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = +1

Query: 268 TVEKVMYSFNNADTFCPFFPLKIYH*LEDVIGL 366
           T E+++  F  ++ FC  F L+ Y  ++DVIG+
Sbjct: 124 TREQLLIHFVRSEVFCDKFILQCYFNVDDVIGV 156


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,989,818
Number of Sequences: 27780
Number of extensions: 325344
Number of successful extensions: 686
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 640
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 686
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1508017654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)