Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40407
         (669 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    23   2.0  
AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    21   8.0  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    21   8.0  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    21   8.0  
AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    21   8.0  

>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 14/49 (28%), Positives = 22/49 (44%)
 Frame = +3

Query: 105 TLCLKVVSGIYVVDLYGPR*PLNTRWATSSFTHL*FRLTMQMRYQTKEK 251
           ++C+ VV  +  V    P+  +   W    F H+  RL +  RY T  K
Sbjct: 317 SICVTVV--VLNVHFRSPQTHVMAPWVRRVFIHVLPRLLVMRRYNTPSK 363


>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = -1

Query: 498 KFVYTAKFVEIVFGGEEK 445
           K +Y  K+++  FG +EK
Sbjct: 30  KVIYEWKYIDYDFGSDEK 47


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 11/23 (47%), Positives = 11/23 (47%)
 Frame = +3

Query: 213 RLTMQMRYQTKEKLMTILYCRKS 281
           RLT   R  T EK     YC KS
Sbjct: 106 RLTRHYRTHTGEKPYQCEYCSKS 128


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 6/14 (42%), Positives = 11/14 (78%)
 Frame = +1

Query: 196 SPIFDFDLQCKCDI 237
           +PI++ + +C CDI
Sbjct: 469 TPIYECNKRCNCDI 482


>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -3

Query: 655 NLKRSSQRYQPIFNSIHL 602
           N +  S++YQ IFN   L
Sbjct: 111 NFRNISEKYQEIFNGYFL 128


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 181,346
Number of Sequences: 438
Number of extensions: 4266
Number of successful extensions: 15
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20221290
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)