Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40407
         (669 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g29210.1 68415.m03550 splicing factor PWI domain-containing p...    28   4.9  
At3g22400.1 68416.m02826 lipoxygenase, putative similar to lipox...    27   8.5  

>At2g29210.1 68415.m03550 splicing factor PWI domain-containing
           protein contains Pfam profile PF01480: PWI domain
          Length = 878

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = -2

Query: 182 PPGVKWLPGPIEIYNVNAANHLETKS 105
           PP    LP P+ I   +AANHLE+ S
Sbjct: 483 PPRRAGLPSPMRIGGSHAANHLESPS 508


>At3g22400.1 68416.m02826 lipoxygenase, putative similar to
           lipoxygenase gi:8649004 [Prunus dulcis], gi:1495802 and
           gi:1495804 from [Solanum tuberosum]
          Length = 886

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +2

Query: 185 HELVHPSLISTYNANAISNKGKINDNTVL 271
           H+L+HP    T N NA++    IN + VL
Sbjct: 568 HKLLHPHFRDTMNINALARHVLINSDGVL 596


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,830,931
Number of Sequences: 28952
Number of extensions: 289202
Number of successful extensions: 487
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 479
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 487
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1412971776
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)