Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40406
         (702 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    25   0.92 
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    24   1.2  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    24   1.6  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            24   1.6  
DQ855485-1|ABH88172.1|  128|Apis mellifera chemosensory protein ...    23   3.7  
AJ973400-1|CAJ01447.1|  128|Apis mellifera hypothetical protein ...    23   3.7  

>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 24.6 bits (51), Expect = 0.92
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = -1

Query: 363 IHLILEKFILLCN 325
           +H  LEKF++LCN
Sbjct: 444 VHATLEKFMILCN 456


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 16/52 (30%), Positives = 23/52 (44%)
 Frame = -1

Query: 645 NGLV*KDYSDKNIFKYVTALIQKIIMCTTMLVVKKNRNVRQNKSKIIRITVY 490
           N LV   Y D +        I  I++CT   V+ +      N+SK I  T+Y
Sbjct: 804 NLLVCNSYVDASYMIAFAYPIMLIVVCTVYAVLTRKIPEAFNESKHIGFTMY 855


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = +1

Query: 358 VYNLWINCTNENI 396
           VY +WINC + N+
Sbjct: 588 VYGVWINCLDPNL 600


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 10/31 (32%), Positives = 14/31 (45%)
 Frame = +1

Query: 484 GIIHCNPYDFRFILTHITVFFYHEHCGAHNY 576
           G    N Y+F +     TV  +H  C  +NY
Sbjct: 131 GNSRANTYNFDYPQVPYTVKNFHPRCAVNNY 161


>DQ855485-1|ABH88172.1|  128|Apis mellifera chemosensory protein 4
           protein.
          Length = 128

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 11/32 (34%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = +1

Query: 220 AKDKNSTRNGRT-I*TLLNMASTMKSYVNCLV 312
           ++DK +T+     I  +LN    + +YVNCL+
Sbjct: 20  SEDKYTTKYDNVDIDVVLNTERLLNAYVNCLL 51


>AJ973400-1|CAJ01447.1|  128|Apis mellifera hypothetical protein
           protein.
          Length = 128

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 11/32 (34%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = +1

Query: 220 AKDKNSTRNGRT-I*TLLNMASTMKSYVNCLV 312
           ++DK +T+     I  +LN    + +YVNCL+
Sbjct: 20  SEDKYTTKYDNVDIDVVLNTERLLNAYVNCLL 51


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 196,021
Number of Sequences: 438
Number of extensions: 4466
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21561255
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)