Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40405
         (634 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0157 + 20388761-20388763,20389807-20389935,20390206-203903...    27   9.4  

>02_04_0157 +
           20388761-20388763,20389807-20389935,20390206-20390349,
           20390690-20390835,20390915-20391071,20391312-20391370,
           20391466-20391664,20392232-20392381,20392471-20392607,
           20392717-20392863,20392975-20393076,20395655-20395712,
           20395816-20395917,20396236-20396273,20396409-20396535,
           20397092-20397259,20397356-20397487,20400222-20400331,
           20400400-20400460,20400929-20401106,20401194-20401399,
           20401552-20401671,20402523-20402621,20404177-20404386,
           20404704-20404843,20404945-20405053,20405351-20405431,
           20405523-20405693,20405825-20405974,20407029-20407202,
           20407453-20407479,20407688-20407758,20407843-20407942,
           20408305-20408361,20409457-20409513,20409656-20409736,
           20410336-20410421,20410535-20410649
          Length = 1466

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 17/50 (34%), Positives = 24/50 (48%)
 Frame = +3

Query: 225 SKSDFMVMSFRAHITDPTHLFCSSL*GFQ*NDHIKLYVNLFLSSLAFVGS 374
           S+SDF +  +  H+T  T LF      +  N+H    V L  S  +FV S
Sbjct: 554 SRSDFTIHHYAGHVTYQTDLFLDKNIDYAVNEH---QVLLHASRCSFVSS 600


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,397,833
Number of Sequences: 37544
Number of extensions: 255771
Number of successful extensions: 508
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 459
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 508
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1549385732
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)