Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40404
         (631 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D13806-1|BAA02964.1|  994|Drosophila melanogaster poly(ADP-ribos...    29   3.9  
BT015238-1|AAT94467.1|  994|Drosophila melanogaster RE04933p pro...    29   3.9  
AY118947-1|AAM50807.1|  557|Drosophila melanogaster LD31274p pro...    29   3.9  
AF533701-1|AAM93435.1|  613|Drosophila melanogaster PARP-E prote...    29   3.9  
AF051548-1|AAC24518.1|  994|Drosophila melanogaster poly(ADP-rib...    29   3.9  

>D13806-1|BAA02964.1|  994|Drosophila melanogaster poly(ADP-ribose)
           polymerase protein.
          Length = 994

 Score = 29.5 bits (63), Expect = 3.9
 Identities = 14/38 (36%), Positives = 23/38 (60%)
 Frame = -1

Query: 370 YPMQLIKKKKNCNVIYI*RGYIRVGSNVGRSDIKSFGT 257
           Y +QL+K  K     +I R + R+G+N+G S ++ F T
Sbjct: 553 YKVQLLKADKK-EKYWIFRSWGRIGTNIGNSKLEEFDT 589


>BT015238-1|AAT94467.1|  994|Drosophila melanogaster RE04933p
           protein.
          Length = 994

 Score = 29.5 bits (63), Expect = 3.9
 Identities = 14/38 (36%), Positives = 23/38 (60%)
 Frame = -1

Query: 370 YPMQLIKKKKNCNVIYI*RGYIRVGSNVGRSDIKSFGT 257
           Y +QL+K  K     +I R + R+G+N+G S ++ F T
Sbjct: 553 YKVQLLKADKK-EKYWIFRSWGRIGTNIGNSKLEEFDT 589


>AY118947-1|AAM50807.1|  557|Drosophila melanogaster LD31274p
           protein.
          Length = 557

 Score = 29.5 bits (63), Expect = 3.9
 Identities = 14/38 (36%), Positives = 23/38 (60%)
 Frame = -1

Query: 370 YPMQLIKKKKNCNVIYI*RGYIRVGSNVGRSDIKSFGT 257
           Y +QL+K  K     +I R + R+G+N+G S ++ F T
Sbjct: 116 YKVQLLKADKK-EKYWIFRSWGRIGTNIGNSKLEEFDT 152


>AF533701-1|AAM93435.1|  613|Drosophila melanogaster PARP-E protein
           protein.
          Length = 613

 Score = 29.5 bits (63), Expect = 3.9
 Identities = 14/38 (36%), Positives = 23/38 (60%)
 Frame = -1

Query: 370 YPMQLIKKKKNCNVIYI*RGYIRVGSNVGRSDIKSFGT 257
           Y +QL+K  K     +I R + R+G+N+G S ++ F T
Sbjct: 553 YKVQLLKADKK-EKYWIFRSWGRIGTNIGNSKLEEFDT 589


>AF051548-1|AAC24518.1|  994|Drosophila melanogaster
           poly(ADP-ribose) polymerase protein.
          Length = 994

 Score = 29.5 bits (63), Expect = 3.9
 Identities = 14/38 (36%), Positives = 23/38 (60%)
 Frame = -1

Query: 370 YPMQLIKKKKNCNVIYI*RGYIRVGSNVGRSDIKSFGT 257
           Y +QL+K  K     +I R + R+G+N+G S ++ F T
Sbjct: 553 YKVQLLKADKK-EKYWIFRSWGRIGTNIGNSKLEEFDT 589


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,548,527
Number of Sequences: 53049
Number of extensions: 507568
Number of successful extensions: 1052
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1035
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1052
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2621070450
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)