Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40403
         (671 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13G7.05 |||acyl-coA-sterol acyltransferase |Schizosaccharomy...    26   4.3  
SPCC285.09c |cgs2|pde1|cAMP-specific phosphodiesterase Cgs2|Schi...    26   5.7  
SPAC4D7.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   7.5  
SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual    25   7.5  

>SPAC13G7.05 |||acyl-coA-sterol acyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 537

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
 Frame = -2

Query: 355 RELNPP-KITHVRYSYHSSYIIFKCTNDH*KLNHF*NKPFLHEYFGLI 215
           RE N P  +  +R+ YHSS   FK    H  L  F     +HE+  L+
Sbjct: 433 REWNKPVHVFLMRHVYHSSISGFKLKKSHAVLLTFLISALVHEFVMLL 480


>SPCC285.09c |cgs2|pde1|cAMP-specific phosphodiesterase
           Cgs2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 346

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = +1

Query: 523 FKFYCPIE*YVKNCIISSLIKSCGSLVLHNFTSLLT 630
           F  +CP     + CI+ SL++S G +++   T LLT
Sbjct: 268 FGHFCPRHLVNELCILQSLVQSYG-VIMPTLTCLLT 302


>SPAC4D7.07c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 600

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = +3

Query: 147 LVNSHVSSNLLNYRDSTTFSIEIISPKY 230
           L+++ ++SN  NY D+   S+ +  P Y
Sbjct: 462 LLDTSINSNWCNYEDTVQVSVRLNRPMY 489


>SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 973

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +3

Query: 153 NSHVSSNLLNYRDSTTFSIEIISPKYSCKKGLF 251
           N  +S + L YR+S  F I   +P  +  +G+F
Sbjct: 848 NDSISPSYLTYRESDGFGIASSNPSPAGSEGIF 880


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,440,790
Number of Sequences: 5004
Number of extensions: 46304
Number of successful extensions: 80
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 80
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)