Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40403
         (671 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006617-12|AAF39774.1|  324|Caenorhabditis elegans Serpentine r...    29   4.0  
Z78544-3|CAB01760.1|  395|Caenorhabditis elegans Hypothetical pr...    28   6.9  
Z78198-3|CAB01569.1| 1010|Caenorhabditis elegans Hypothetical pr...    27   9.2  

>AC006617-12|AAF39774.1|  324|Caenorhabditis elegans Serpentine
           receptor, class d (delta)protein 67 protein.
          Length = 324

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 15/48 (31%), Positives = 27/48 (56%)
 Frame = +1

Query: 508 YVYFKFKFYCPIE*YVKNCIISSLIKSCGSLVLHNFTSLLTEPVLFLM 651
           +VY+ F +Y P+  +  +C    LI      ++HNFT+ L +P+ F +
Sbjct: 3   FVYYFFHYYWPV--FFMSCSSLFLIMF---FLIHNFTTPLLKPLRFFL 45


>Z78544-3|CAB01760.1|  395|Caenorhabditis elegans Hypothetical
           protein K04G11.4 protein.
          Length = 395

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = -2

Query: 340 PKITHVRYSYHSSYIIFKCTNDH*KLNHF*NKPFLHEYFG 221
           P ITHV++S +  YI+    N+  KL  +     L EY G
Sbjct: 276 PPITHVKFSPNGKYILASNLNNTLKLWDYQKLRVLKEYTG 315


>Z78198-3|CAB01569.1| 1010|Caenorhabditis elegans Hypothetical
           protein F55C5.4 protein.
          Length = 1010

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 10/23 (43%), Positives = 18/23 (78%)
 Frame = +3

Query: 123 LMVSKLKYLVNSHVSSNLLNYRD 191
           + +++LKYL+ SH +SNL+  +D
Sbjct: 588 MTLNRLKYLLQSHSTSNLIAMKD 610


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,069,279
Number of Sequences: 27780
Number of extensions: 245621
Number of successful extensions: 539
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 537
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 539
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1518563232
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)