Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40402
(371 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0343 - 16960764-16960895,16961166-16961171,16961272-169616... 28 2.7
02_03_0118 - 15451031-15451123,15451744-15451831,15451914-154519... 28 2.7
10_08_0043 - 14390398-14391531,14391850-14393691,14393800-143968... 27 3.6
10_08_0590 + 19037115-19037485,19037814-19037916,19038199-190382... 27 4.7
07_03_1490 - 26941322-26941417,26941850-26942377,26944590-269448... 27 6.2
07_03_1488 - 26925166-26925729,26927946-26928184,26929247-269296... 27 6.2
10_08_0973 - 21963754-21963936,21964089-21964383,21964504-219646... 26 8.2
08_02_1366 + 26427433-26427636,26427874-26427888 26 8.2
03_06_0614 - 35099225-35099461,35099545-35099694,35099919-351000... 26 8.2
>10_08_0343 - 16960764-16960895,16961166-16961171,16961272-16961640,
16962118-16962304,16962567-16962759,16962864-16963137,
16963215-16963374,16963985-16964199,16964784-16964876,
16965192-16965260,16965293-16965445,16965534-16965737,
16966416-16966691,16967336-16967431,16967585-16967788,
16967877-16968069,16968229-16968374,16968771-16969425,
16971462-16971774,16971989-16972139,16972602-16973815,
16973933-16974182,16974784-16975035
Length = 1934
Score = 27.9 bits (59), Expect = 2.7
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = +3
Query: 54 DSKSKKCSAEKYQTHXTRPHQ 116
D S KC A K+ H T PH+
Sbjct: 1372 DPSSSKCKAYKFYLHSTEPHK 1392
>02_03_0118 -
15451031-15451123,15451744-15451831,15451914-15451985,
15452896-15453018,15453541-15453629
Length = 154
Score = 27.9 bits (59), Expect = 2.7
Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Frame = -3
Query: 228 MSLTLE*MAISLHSWRPDXVLGLLASSXTCRLF-SSYEIDVALXNXFGISQRYIFYS 61
+ +TL + ++ SWR D VLG CR F ++ ID+ + N ++ + + YS
Sbjct: 38 LDVTLIVLNVTHPSWRGDDVLGCKLEQYKCRAFRTNLIIDLKIQNYVKLTYK-LHYS 93
>10_08_0043 - 14390398-14391531,14391850-14393691,14393800-14396825,
14397510-14397609
Length = 2033
Score = 27.5 bits (58), Expect = 3.6
Identities = 11/40 (27%), Positives = 22/40 (55%)
Frame = +2
Query: 218 VSDIHDSLQGARFYVSXSSDTCSLHSCLRSSVSDSIIHIF 337
+SD+ ++ R ++ S +TC H S++SD ++F
Sbjct: 1001 ISDMKAEIENLRTKLTDSEETCQAHLANNSALSDEKNNVF 1040
>10_08_0590 +
19037115-19037485,19037814-19037916,19038199-19038208,
19038305-19038435,19038881-19038901
Length = 211
Score = 27.1 bits (57), Expect = 4.7
Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = -1
Query: 299 DKNVMNMYQMTRIHRISLPATSHVCH*HLN-RWLY 198
DKN N + ++R L T+H+C + N R LY
Sbjct: 34 DKNCQNEHVFGNMYRCKLTGTTHICDKNCNQRILY 68
>07_03_1490 -
26941322-26941417,26941850-26942377,26944590-26944828,
26945891-26946318,26946728-26946837
Length = 466
Score = 26.6 bits (56), Expect = 6.2
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = -3
Query: 315 DTDDRRQECNEHVSDD 268
D DDRR E EHV +D
Sbjct: 120 DEDDRRSETEEHVEED 135
>07_03_1488 -
26925166-26925729,26927946-26928184,26929247-26929674,
26930084-26930193
Length = 446
Score = 26.6 bits (56), Expect = 6.2
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = -3
Query: 315 DTDDRRQECNEHVSDD 268
D DDRR E EHV +D
Sbjct: 120 DEDDRRSETEEHVEED 135
>10_08_0973 -
21963754-21963936,21964089-21964383,21964504-21964616,
21964729-21964913,21965054-21965201,21965297-21965575,
21965657-21965761,21965936-21966178,21966426-21966486,
21966734-21966792
Length = 556
Score = 26.2 bits (55), Expect = 8.2
Identities = 9/27 (33%), Positives = 16/27 (59%)
Frame = +3
Query: 63 SKKCSAEKYQTHXTRPHQSHKMRIVYK 143
+K+CS +Q H P +K R++Y+
Sbjct: 445 TKQCSTHLHQLHICLPSSRNKTRLLYR 471
>08_02_1366 + 26427433-26427636,26427874-26427888
Length = 72
Score = 26.2 bits (55), Expect = 8.2
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +2
Query: 155 AKSPSTXSGLQE*SDIAIYSSVSDIHDS 238
A PS+ G Q S IA++ + D+H S
Sbjct: 28 ASQPSSLEGFQPLSKIAVHKATVDLHGS 55
>03_06_0614 -
35099225-35099461,35099545-35099694,35099919-35100066,
35100152-35100231,35100428-35100594,35100692-35100940,
35101025-35102310,35102423-35102544,35102946-35103272
Length = 921
Score = 26.2 bits (55), Expect = 8.2
Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Frame = -3
Query: 189 SWRPDXVLGLLAS-SXTCRLFSSYEIDVALXN 97
SW P+ V L S TCRLF+ E+ +A N
Sbjct: 544 SWPPNEVESLQEKYSSTCRLFTYEELKLATSN 575
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,526,798
Number of Sequences: 37544
Number of extensions: 123188
Number of successful extensions: 286
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 280
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 286
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 588739508
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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