Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40401
         (462 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                25   0.30 
DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    24   0.92 
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   2.1  
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    22   2.8  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    21   4.9  
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    21   4.9  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    21   4.9  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   8.5  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   8.5  

>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 25.4 bits (53), Expect = 0.30
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +2

Query: 65  FLPSSFHPYQNFKGYY*NHQ 124
           FLP S+HP+Q+    Y  H+
Sbjct: 311 FLPPSYHPHQHHPSQYHPHR 330


>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 23.8 bits (49), Expect = 0.92
 Identities = 11/41 (26%), Positives = 18/41 (43%)
 Frame = -3

Query: 136 MCTSLMISIVPFEILVGMERAWKKEVFSGPRPVLWAGMTTD 14
           +C   ++ +  +  L      WK     GP+PV + G T D
Sbjct: 8   LCGIAVLFLALYYYLTSTFDFWKSRGVVGPKPVPFFGTTKD 48


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 22.6 bits (46), Expect = 2.1
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +3

Query: 111 IEIINDVHILKPGDKVRASA 170
           + +I   H+L+  DK +ASA
Sbjct: 155 LNVIQQTHLLQTADKKKASA 174


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 22.2 bits (45), Expect = 2.8
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -3

Query: 244 PESYTCLTTRPYENGEMFNMLRRVAAE 164
           PE Y   +  PY  GE F +++  AAE
Sbjct: 109 PEIYYIWSHFPYVFGEAFCIIQSFAAE 135


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.4 bits (43), Expect = 4.9
 Identities = 6/13 (46%), Positives = 10/13 (76%)
 Frame = -2

Query: 149 TGLQDVYIVDDFN 111
           TG+ D+++ DD N
Sbjct: 114 TGISDLFVFDDLN 126


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 21.4 bits (43), Expect = 4.9
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +3

Query: 195 ISPFSYGLVVKQVYDSGTI 251
           ISP + GLV + +  SGT+
Sbjct: 264 ISPVTRGLVRRGILQSGTL 282


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 21.4 bits (43), Expect = 4.9
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +3

Query: 195 ISPFSYGLVVKQVYDSGTI 251
           ISP + GLV + +  SGT+
Sbjct: 264 ISPVTRGLVRRGILQSGTL 282


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 20.6 bits (41), Expect = 8.5
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = +2

Query: 155 GSSFCSHPSQHVEHLSILIWSC 220
           G +F  +PS  +E     IWSC
Sbjct: 357 GLAFLVYPSAVLELPGSSIWSC 378


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 20.6 bits (41), Expect = 8.5
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = +2

Query: 155 GSSFCSHPSQHVEHLSILIWSC 220
           G +F  +PS  +E     IWSC
Sbjct: 410 GLAFLVYPSAVLELPGSSIWSC 431


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 126,773
Number of Sequences: 438
Number of extensions: 2710
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12312900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)