Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40394
         (605 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_25189| Best HMM Match : Drf_FH1 (HMM E-Value=4.1)                   29   2.2  
SB_11594| Best HMM Match : F5_F8_type_C (HMM E-Value=4.4e-35)          29   2.2  
SB_26878| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.7  
SB_10556| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.9  

>SB_25189| Best HMM Match : Drf_FH1 (HMM E-Value=4.1)
          Length = 570

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 19/73 (26%), Positives = 32/73 (43%), Gaps = 5/73 (6%)
 Frame = +1

Query: 361 CHYINVLLCMIMCYLFLYFTLYKCSLLI*FRFNVRATRL*TVLIF-----ITQPTPL*YK 525
           CHY+   LC  +   +     Y  S    + +N+ AT + T  +      I+QP PL +K
Sbjct: 180 CHYLLHKLCYCVALQYRSHCHYYTSCATVWHYNIAATAIITQAVLLCGTTISQPLPLLHK 239

Query: 526 C*IVIFSFHTNYC 564
               +   + N+C
Sbjct: 240 LCYCVALQYRNHC 252


>SB_11594| Best HMM Match : F5_F8_type_C (HMM E-Value=4.4e-35)
          Length = 1814

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 19/63 (30%), Positives = 28/63 (44%)
 Frame = -1

Query: 428  LYNVKYKNK*HIIIQSRTLI*WQQFPVRLAVSSPYIYFHIFLFKLPTKISLHIKQKRFPF 249
            LY+ K K K  + I          F    A  +PY++ H+ LF   TK+ L++  K    
Sbjct: 1199 LYHTKAKGKPGVYIFMTQSWNNTLFVTAPATETPYMWNHVVLFYSSTKVILYLNGKPHDL 1258

Query: 248  FIR 240
            F R
Sbjct: 1259 FWR 1261


>SB_26878| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 281

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = -3

Query: 402 ITHYHTKQNIDIVATISC*TSSFITLYLFSHFFIQITD 289
           + HYH K+ +DI  T  C TS  + + +  H + Q+ D
Sbjct: 223 VGHYHYKKVLDITTTSKCWTSP-LPVSVGHHHYQQVLD 259


>SB_10556| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1788

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 16/42 (38%), Positives = 22/42 (52%)
 Frame = +3

Query: 21  RQLYTVYKTLLLRNTIPFFTISLNIFTYYFINLEIKHHQTLH 146
           R L TVY+  L + T PF  +SL I      N+++  H T H
Sbjct: 280 RSLETVYEAYLPKGTHPFVYMSLQITP---SNVDVNVHPTKH 318


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,385,722
Number of Sequences: 59808
Number of extensions: 317964
Number of successful extensions: 552
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 505
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 552
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1475788250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)