Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40392
         (613 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    29   0.53 
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb...    27   1.6  
SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyc...    27   2.1  
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        26   3.7  
SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces...    26   3.7  
SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit C...    26   3.7  

>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 29.1 bits (62), Expect = 0.53
 Identities = 17/52 (32%), Positives = 22/52 (42%)
 Frame = +1

Query: 208  SKNCKHAATTPSRRGSFGSGPVHCSHNRTEGDSEXXXXXXXXXXNQSGKHRH 363
            SK  +H  +T SR+ S  SG  H  HN    DS           ++   HRH
Sbjct: 1287 SKAERHETSTSSRKSS-KSGEHHHHHNEGHADSSSTRTSLAHQDSRKSLHRH 1337


>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 2685

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = +1

Query: 7    WSIINSRIPRGCRELNYQIHTQFRTSNSH 93
            W +I +RIP+ C + +Y ++  +R   SH
Sbjct: 1437 WQVI-TRIPQYCHDTHYGVYDAYRDFRSH 1464


>SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1238

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 13/44 (29%), Positives = 21/44 (47%)
 Frame = -1

Query: 316  ARVRCHPQSCYVNSERAPNRMNHVAKV*LPRACNFSRVITAWAS 185
            A  RC  + C  N     N + HV  +  P++C+  + +  WAS
Sbjct: 998  AEYRCQWEGCLANLHSLENFIKHVLLLHHPKSCSVVKCL--WAS 1039


>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +1

Query: 505  DDEKIDEVAGDLQFPNSISPLDMVIADVRKK 597
            +D K+DE  GD+   + +  +DM  AD  K+
Sbjct: 4088 EDLKLDEKEGDVSKDSDLEDMDMEAADENKE 4118


>SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 565

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 23/80 (28%), Positives = 40/80 (50%)
 Frame = +2

Query: 179 SNGGPRRDDSRKIASTRQLHLRDVVHSVRGPFTVHITGLRVTANARLQVERDGKIRAENI 358
           SNG P    ++   +T    + D +H+ +   T+H+TG    A ++ + E D ++ + N 
Sbjct: 172 SNGQPHNLPAQAQPATIY-GIPDALHTTQNGTTIHVTGTPPGAVSQ-RSEPDSRLSSMN- 228

Query: 359 VMDLSASNIAVNLENAEIIS 418
            M L AS  A  L+ A  I+
Sbjct: 229 EMQLLASAAANQLDAAPRIT 248


>SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit
           Cct2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 527

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 17/80 (21%), Positives = 40/80 (50%), Gaps = 1/80 (1%)
 Frame = +2

Query: 173 YRSNGGPRRDDSRKIAS-TRQLHLRDVVHSVRGPFTVHITGLRVTANARLQVERDGKIRA 349
           +  +G   R ++ +++S    + + D+V S  GP  +    L+  ++  + V  DG    
Sbjct: 9   FNESGIQERGENARLSSFVGAIAVGDLVKSTLGPKGMDKI-LQSNSSGDIVVTNDGATIL 67

Query: 350 ENIVMDLSASNIAVNLENAE 409
           ++I +D +A+ + VN+   +
Sbjct: 68  KSIALDNAAAKVLVNISKVQ 87


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,504,030
Number of Sequences: 5004
Number of extensions: 49900
Number of successful extensions: 143
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 267622334
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)