Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40392
         (613 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      26   0.25 
DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    24   1.0  
AF134820-1|AAD40235.1|  166|Apis mellifera putative Ets-family p...    23   3.1  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     21   7.2  
AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc fi...    21   9.5  

>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 26.2 bits (55), Expect = 0.25
 Identities = 16/41 (39%), Positives = 21/41 (51%)
 Frame = +1

Query: 394 PGKRRNHLRIYQHHRTVHLRFDQTLRPQGSLCHHQNHDDEK 516
           P + R+ L IYQ H   HL   Q L  Q     ++N D+EK
Sbjct: 61  PPEHRD-LPIYQSHH--HLHHHQVLYQQSPYLMYENPDEEK 98


>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 24.2 bits (50), Expect = 1.0
 Identities = 17/43 (39%), Positives = 28/43 (65%)
 Frame = +2

Query: 269 PFTVHITGLRVTANARLQVERDGKIRAENIVMDLSASNIAVNL 397
           P+T++I  L  T++  L   R  ++RAE+I M+   +NIAV+L
Sbjct: 160 PYTLNIFDL--TSDKLL---RQYRLRAEDINMNTFIANIAVDL 197


>AF134820-1|AAD40235.1|  166|Apis mellifera putative Ets-family
           protein protein.
          Length = 166

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -1

Query: 295 QSCYVNSERAPNRMNHVAK 239
           + C ++S   PN+M+ VAK
Sbjct: 146 ERCRISSNFLPNKMHQVAK 164


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = -2

Query: 594 FPYISNDHIQWRYRVWELQIARHFIDLFV 508
           FP+I     Q R   W   +ARH +  F+
Sbjct: 354 FPWIDAIMTQLREEGWIHHLARHAVACFL 382


>AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc
           finger domain-Z3 isoform protein.
          Length = 92

 Score = 21.0 bits (42), Expect = 9.5
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = -1

Query: 544 TANRPPLHRSFRHRGFDG 491
           T N    H+S +HRG  G
Sbjct: 47  TKNSLTTHKSLQHRGSSG 64


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 169,088
Number of Sequences: 438
Number of extensions: 3507
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18093444
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)