Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40390
         (632 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19F5.05c |ppp1|SPBC25D12.01c|pescadillo-family BRCT domain p...    91   1e-19
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    30   0.24 
SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1 |Schizosaccharom...    27   2.3  
SPCC61.05 |||S. pombe specific multicopy membrane protein family...    26   5.2  
SPAC4F8.07c |hxk2||hexokinase 2 |Schizosaccharomyces pombe|chr 1...    25   6.9  
SPBC342.05 |crb2|rhp9, rhp9|DNA repair protein RAD9 homolog, Rhp...    25   9.1  

>SPBC19F5.05c |ppp1|SPBC25D12.01c|pescadillo-family BRCT domain
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 607

 Score = 91.1 bits (216), Expect = 1e-19
 Identities = 40/85 (47%), Positives = 59/85 (69%)
 Frame = +2

Query: 254 NRKRAQKGAGGIKTLYHTKDIKFLLHEPIIWKLRELKVYQQKIRRARAQREYGKMRKFLR 433
           N+K+A KG+    T Y+TKDI++LLHEPI+ K RE KV+ +K+ +A  + E    ++   
Sbjct: 49  NKKKANKGSTAPVTFYYTKDIQYLLHEPIVQKFREYKVFARKLSKALGKGELETAKRLEA 108

Query: 434 DYPEINIDHIVKERYPTFVDALRDL 508
             P  ++DHI+KERYPTF DAL+D+
Sbjct: 109 RKPTYSLDHIIKERYPTFHDALKDI 133



 Score = 44.0 bits (99), Expect = 2e-05
 Identities = 19/46 (41%), Positives = 26/46 (56%)
 Frame = +3

Query: 138 SGEGAQFMTRXXXXXXXXXXXXDFRRICILKGIYPREPRTERGLKK 275
           +G    ++TR            DFRRICILKG+YPREP+ ++   K
Sbjct: 10  AGAARIYITRNQALKKLQLTLADFRRICILKGVYPREPKNKKKANK 55



 Score = 37.5 bits (83), Expect = 0.002
 Identities = 18/39 (46%), Positives = 21/39 (53%)
 Frame = +1

Query: 508 DDCLTLCFLFSTFPSLKKVPRDQSFLCRRLTVEFMHAVI 624
           DD L++ FLFST P   K+       C RL  EF H VI
Sbjct: 134 DDALSMLFLFSTMPVTDKIGAATVANCERLCAEFQHYVI 172


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 30.3 bits (65), Expect = 0.24
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = -2

Query: 490 NKRGVSFLYYVINVYFWIVPQKLS 419
           NK+G+S+   VI  + W+V QKLS
Sbjct: 278 NKKGLSYFKAVIRAFEWLVEQKLS 301


>SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 834

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = -2

Query: 310 FSVIKCFDSACTFLSPLSVLGSRGYIPFKIQIR 212
           + ++  FD+  TF  PL++L + G  PF  ++R
Sbjct: 337 WDILNTFDALATFAYPLNLLLNHGIRPFYQKLR 369


>SPCC61.05 |||S. pombe specific multicopy membrane protein family
           1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 469

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = -2

Query: 151 APSPEEYFFFFLDTIVIVILIQKVICKGFLFSCIK 47
           AP PE YF     T++ + +    I   +L  CIK
Sbjct: 189 APPPESYFRTIKSTLLAISMFLGFITLTWLLRCIK 223


>SPAC4F8.07c |hxk2||hexokinase 2 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 455

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +2

Query: 443 EINIDHIVKERYPTFVDALRDLM 511
           ++ +D  + E YP FVD LR+ +
Sbjct: 394 DVGVDGSLVEHYPHFVDMLREAL 416


>SPBC342.05 |crb2|rhp9, rhp9|DNA repair protein RAD9 homolog,
           Rhp9|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 778

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = -1

Query: 185 FLKRCFSGHKLSSFSGRILLLLFGHHCDC 99
           F+K+C   +++  FS  +L   + H  DC
Sbjct: 635 FIKQCLKMNRVVDFSPYLLASGYSHRLDC 663


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,717,062
Number of Sequences: 5004
Number of extensions: 59817
Number of successful extensions: 134
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 281707720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)