Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40389
         (621 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit S2|S...    45   8e-06
SPBP4H10.05c |spe2||S-adenosylmethionine decarboxylase proenzyme...    30   0.31 
SPAC23H3.11c |||glucosidase |Schizosaccharomyces pombe|chr 1|||M...    26   3.8  
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy...    25   6.7  
SPAC13D6.04c |btb3||BTB/POZ domain protein Btb3|Schizosaccharomy...    25   8.8  
SPBC24C6.09c |||phosphoketolase |Schizosaccharomyces pombe|chr 2...    25   8.8  

>SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit
           S2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 263

 Score = 45.2 bits (102), Expect = 8e-06
 Identities = 29/82 (35%), Positives = 38/82 (46%), Gaps = 1/82 (1%)
 Frame = +3

Query: 264 NDNMRSYIYGSRLGHLIFDLDTTAEHLRKALNFTAHIAYRGGIICFF-NRNSLNAHIVEK 440
           N   + +IYG R G  I  LD T  +LR+A++    IA   GII F   RN     +V  
Sbjct: 68  NPYTQPFIYGKREGIHIISLDQTMVYLRRAISVVRSIAKENGIILFIGTRNGQKDSVVAA 127

Query: 441 TAMECGEYAHTRFWRGGIFTNA 506
                G +   R W  G+ TNA
Sbjct: 128 AKRARGYHIFDR-WLPGLLTNA 148


>SPBP4H10.05c |spe2||S-adenosylmethionine decarboxylase proenzyme
           Spe2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 378

 Score = 29.9 bits (64), Expect = 0.31
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = -2

Query: 113 EVDVYLRSENPYFVYLHPVLLK 48
           E+D YL SE+  FV+ H ++LK
Sbjct: 76  EIDAYLLSESSMFVFAHKIILK 97


>SPAC23H3.11c |||glucosidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 629

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = +3

Query: 378 YRGGIICFFNRNSLNAHIVEKTAMECGEYAHTRFWRGGIFTNAN 509
           +R G++  +N+  L   I+E +A   G   H   W  GI+T  N
Sbjct: 303 FRSGMLQSWNKLCLKGGIIEVSASLAGSGEHAGLW-PGIWTLGN 345


>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 578

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +1

Query: 1   LISFSYINRTKRNVMILSNTGCRYTKYGFSLLRY 102
           L+ FS++ R  +  +I+  + C   KY   LL Y
Sbjct: 325 LLLFSFLKRNLKKKVIVFMSSCASVKYMAELLNY 358


>SPAC13D6.04c |btb3||BTB/POZ domain protein Btb3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 523

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 5/49 (10%)
 Frame = +3

Query: 255 GSLNDNMRSYIYGSRLGHLIFDLDTTAEHL-----RKALNFTAHIAYRG 386
           G+LNDN+R  +    +   I +    A H+       AL+FT  I + G
Sbjct: 125 GALNDNIRRMLLSYDITKAIDESQPYASHITSLLSNSALHFTTDIVFAG 173


>SPBC24C6.09c |||phosphoketolase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 825

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -1

Query: 510 CWHL*RYHLSRILYEHILHIP 448
           C +  RYH++R+  +H LH P
Sbjct: 758 CNNTSRYHVARMALQHALHNP 778


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,829,256
Number of Sequences: 5004
Number of extensions: 64677
Number of successful extensions: 162
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 273658928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)