Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40388
         (623 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q0TWY2 Cluster: Putative uncharacterized protein; n=1; ...    34   2.4  
UniRef50_O97916 Cluster: Reverse transcriptase-like; n=70; Bos t...    34   3.2  
UniRef50_P77400 Cluster: Inner membrane transport protein ybaT; ...    34   3.2  
UniRef50_UPI00004984A5 Cluster: conserved hypothetical protein; ...    33   4.2  
UniRef50_A7CZJ6 Cluster: Putative uncharacterized protein precur...    33   7.3  
UniRef50_A3RQ18 Cluster: Molybdopterin-guanine dinucleotide bios...    33   7.3  
UniRef50_A0D680 Cluster: Chromosome undetermined scaffold_39, wh...    33   7.3  
UniRef50_UPI0000E48997 Cluster: PREDICTED: similar to reverse tr...    32   9.7  
UniRef50_A5C0X9 Cluster: Putative uncharacterized protein; n=2; ...    32   9.7  
UniRef50_Q95WE0 Cluster: 32 kDa salivary protein precursor; n=1;...    32   9.7  

>UniRef50_Q0TWY2 Cluster: Putative uncharacterized protein; n=1;
           Phaeosphaeria nodorum|Rep: Putative uncharacterized
           protein - Phaeosphaeria nodorum (Septoria nodorum)
          Length = 2068

 Score = 34.3 bits (75), Expect = 2.4
 Identities = 21/61 (34%), Positives = 30/61 (49%)
 Frame = -1

Query: 530 RANVSEDESHEMVRPNSVLSGHQASRCPSRGQESQQMERNGTREIDAVGESRPTVMRERR 351
           RANV+  +     RP +V +G ++   P  G ++   E  GT E D   E  PT+   RR
Sbjct: 635 RANVATPKIVAKTRPKNVSTGTESLERPLTGDKNHDAE--GTEEADDSDEQPPTLSVFRR 692

Query: 350 P 348
           P
Sbjct: 693 P 693


>UniRef50_O97916 Cluster: Reverse transcriptase-like; n=70; Bos
           taurus|Rep: Reverse transcriptase-like - Bos taurus
           (Bovine)
          Length = 335

 Score = 33.9 bits (74), Expect = 3.2
 Identities = 14/32 (43%), Positives = 23/32 (71%)
 Frame = -3

Query: 603 LEFFGHIARKEGHNIEGLMAMGMIEGKRLRGR 508
           L++FGH+ R+   ++E  + +G IEG+R RGR
Sbjct: 259 LQYFGHLMRR-ADSLEKTLMLGKIEGRRRRGR 289


>UniRef50_P77400 Cluster: Inner membrane transport protein ybaT;
           n=16; Enterobacteriaceae|Rep: Inner membrane transport
           protein ybaT - Escherichia coli (strain K12)
          Length = 430

 Score = 33.9 bits (74), Expect = 3.2
 Identities = 18/50 (36%), Positives = 26/50 (52%)
 Frame = +1

Query: 226 YTMLFLHRGSNREHLLSVYYIRKVGTRLKFEYRCIAQHECAGRLSLITVG 375
           Y + FLH GS  EHL+ +Y +  +     F    ++ H   GRL +I VG
Sbjct: 116 YAVQFLHEGSQEEHLILLYALGIIAVMTLF--NSLSNH-AVGRLEVILVG 162


>UniRef50_UPI00004984A5 Cluster: conserved hypothetical protein;
           n=1; Entamoeba histolytica HM-1:IMSS|Rep: conserved
           hypothetical protein - Entamoeba histolytica HM-1:IMSS
          Length = 963

 Score = 33.5 bits (73), Expect = 4.2
 Identities = 17/49 (34%), Positives = 27/49 (55%)
 Frame = +1

Query: 475 NTEFGRTISWDSSSETFALYHAHCHQALNIVTLLSSNVSKELQYSKNAY 621
           N++FG++IS D SS     Y   C Q + ++T  +S +  E+  SK  Y
Sbjct: 820 NSQFGQSISIDYSSLNIINYDGSCSQPIILITTKNSVLVIEITESKTLY 868


>UniRef50_A7CZJ6 Cluster: Putative uncharacterized protein
           precursor; n=2; Opitutaceae bacterium TAV2|Rep: Putative
           uncharacterized protein precursor - Opitutaceae
           bacterium TAV2
          Length = 541

 Score = 32.7 bits (71), Expect = 7.3
 Identities = 21/65 (32%), Positives = 26/65 (40%)
 Frame = -3

Query: 465 SSVTMPFTRPRIAADGEKWYKRD*CSGRVTTHSNEGKTSGAFVLSDAPVFEFQAGTNFSN 286
           +S T    R R+A DG   Y  D    R+   S+ G   G   L D PV    A  +  N
Sbjct: 26  ASDTWQSERVRLAPDGTLEYPADAEGNRIPDFSHAGYRGGGVPLPDVPVVRTLAPVSGDN 85

Query: 285 VIHTQ 271
             H Q
Sbjct: 86  TAHLQ 90


>UniRef50_A3RQ18 Cluster: Molybdopterin-guanine dinucleotide
           biosynthesis protein B; n=7; Burkholderiaceae|Rep:
           Molybdopterin-guanine dinucleotide biosynthesis protein
           B - Ralstonia solanacearum UW551
          Length = 176

 Score = 32.7 bits (71), Expect = 7.3
 Identities = 17/50 (34%), Positives = 25/50 (50%)
 Frame = -1

Query: 491 RPNSVLSGHQASRCPSRGQESQQMERNGTREIDAVGESRPTVMRERRPAH 342
           R  +V   H      + G++S +M   G  E+  VG+ R  +MRE  PAH
Sbjct: 32  RVAAVKHAHHGFDLDTPGKDSYRMRAAGGSEVVLVGDRRLALMREYAPAH 81


>UniRef50_A0D680 Cluster: Chromosome undetermined scaffold_39, whole
           genome shotgun sequence; n=2; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_39,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 750

 Score = 32.7 bits (71), Expect = 7.3
 Identities = 15/53 (28%), Positives = 31/53 (58%)
 Frame = -1

Query: 452 CPSRGQESQQMERNGTREIDAVGESRPTVMRERRPAHSC*AMHRYSNFRRVPT 294
           C +  Q +Q++E+  T++++  G+S    M +  P H    +++YSN +R+ T
Sbjct: 692 CDAEDQINQELEQKQTQKLNKKGKS---AMEDSLPCHKTVQVNKYSNLKRMLT 741


>UniRef50_UPI0000E48997 Cluster: PREDICTED: similar to reverse
           transcriptase-like; n=6; Strongylocentrotus
           purpuratus|Rep: PREDICTED: similar to reverse
           transcriptase-like - Strongylocentrotus purpuratus
          Length = 415

 Score = 32.3 bits (70), Expect = 9.7
 Identities = 22/68 (32%), Positives = 30/68 (44%), Gaps = 1/68 (1%)
 Frame = -3

Query: 603 LEFFGHIARKEGHNIEGLMAMGMIEGKRLRGRIPRDGPTKFGVVWTSSVTMPFTR-PRIA 427
           L +FGHI R  G  +   +    +EGKR RGR  +         WT    + +T   R+A
Sbjct: 332 LGYFGHILRGSGSPLAAQIIESQVEGKRKRGRQRKQWFDNI-KEWTG---LTYTEAKRLA 387

Query: 426 ADGEKWYK 403
            D   W K
Sbjct: 388 QDRNNWRK 395


>UniRef50_A5C0X9 Cluster: Putative uncharacterized protein; n=2;
           Vitis vinifera|Rep: Putative uncharacterized protein -
           Vitis vinifera (Grape)
          Length = 869

 Score = 32.3 bits (70), Expect = 9.7
 Identities = 18/54 (33%), Positives = 30/54 (55%)
 Frame = +2

Query: 332 LNTNAPDVFPSLLWVVTRPLHQSLLYHFSPSAAILGLVKGIVTLDVQTTPNLVG 493
           L  + PD+  ++  V++R +H     HFS +  +L  +KGIV L VQ + +  G
Sbjct: 643 LTASRPDILFTVS-VLSRFMHSPSEKHFSAAKKVLRYIKGIVALGVQFSKSAKG 695


>UniRef50_Q95WE0 Cluster: 32 kDa salivary protein precursor; n=1;
           Phlebotomus papatasi|Rep: 32 kDa salivary protein
           precursor - Phlebotomus papatasi
          Length = 246

 Score = 32.3 bits (70), Expect = 9.7
 Identities = 22/67 (32%), Positives = 35/67 (52%), Gaps = 5/67 (7%)
 Frame = -1

Query: 524 NVSEDESHEMVRPNSVLSGHQASRCPSRGQESQ--QMERNGTREIDA-VGESRP--TVMR 360
           ++S+D  +E+VR N    G + S+    G+ES     + +G R   +  GESRP  +   
Sbjct: 56  DISDDNINEVVRDNGRKGGDRGSKSTPSGKESHPTATQTSGRRPSQSPCGESRPSGSATS 115

Query: 359 ERRPAHS 339
            RRP+ S
Sbjct: 116 GRRPSQS 122


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 713,573,019
Number of Sequences: 1657284
Number of extensions: 15911124
Number of successful extensions: 39970
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 38336
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 39949
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 45636850930
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)