Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40388
         (623 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC530.09c |||cation dependent mannose-6-phosphate cargo recept...    26   5.1  
SPAC4D7.10c |||SAGA complex subunit Spt20 |Schizosaccharomyces p...    26   5.1  
SPBC1289.13c |||alpha-1,2-galactosyltransferase|Schizosaccharomy...    25   6.7  
SPAC222.05c |mss1||COX RNA-associated protein|Schizosaccharomyce...    25   6.7  
SPAC1142.03c |swi2|SPAC17G6.20c|Swi5 complex subunit Swi2|Schizo...    25   8.9  
SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gc...    25   8.9  

>SPBC530.09c |||cation dependent mannose-6-phosphate cargo receptor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 296

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = +1

Query: 505 DSSSETF-ALYHAHCHQALNIVTLLSSNVSKELQYSKNAY 621
           +S  E F AL+H +  +  ++  L+  N S++  YS N Y
Sbjct: 37  ESDEEPFCALHHPNTGEYFDLSGLIRDNTSEKGDYSVNGY 76


>SPAC4D7.10c |||SAGA complex subunit Spt20 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 473

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 15/51 (29%), Positives = 24/51 (47%)
 Frame = -1

Query: 494 VRPNSVLSGHQASRCPSRGQESQQMERNGTREIDAVGESRPTVMRERRPAH 342
           +R  ++L   +AS+  +RG   +Q+     R+  A G    TVM   R  H
Sbjct: 404 IRQLAILFQQRASQLKARGATREQITEILNRQAIAAGTDLATVMTVARNLH 454


>SPBC1289.13c |||alpha-1,2-galactosyltransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 375

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +3

Query: 93  PHPSNRNALLLHGRNRQGIPT 155
           PHP N   +LL G N Q  P+
Sbjct: 97  PHPENSKIVLLMGSNAQNDPS 117


>SPAC222.05c |mss1||COX RNA-associated protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 496

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 15/34 (44%), Positives = 18/34 (52%)
 Frame = -3

Query: 144 PAYFCREAVMRFGLKGGAAVVTVLEILELVSQGG 43
           P+ F  E V+   L GG AVV V   LE + Q G
Sbjct: 90  PSSFTGEDVVELQLHGGTAVVDV--TLEAIKQSG 121


>SPAC1142.03c |swi2|SPAC17G6.20c|Swi5 complex subunit
           Swi2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 722

 Score = 25.0 bits (52), Expect = 8.9
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +2

Query: 479 PNLVGPSRGIRPLRRLPSIMPIAIRPSIL*PSF 577
           P+L   S G  PL   P+I  I+  PS + P+F
Sbjct: 316 PDLTSDSTGQDPLSSEPTIFDISPLPSDMEPTF 348


>SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gcn2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1576

 Score = 25.0 bits (52), Expect = 8.9
 Identities = 9/25 (36%), Positives = 17/25 (68%)
 Frame = +2

Query: 401 LLYHFSPSAAILGLVKGIVTLDVQT 475
           +L  +SP   +  L++ ++TLDV+T
Sbjct: 326 VLQEYSPKFTLFSLLQTVLTLDVET 350


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,870,353
Number of Sequences: 5004
Number of extensions: 62477
Number of successful extensions: 164
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 275671126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)