Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40388
(623 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0916 + 29390813-29391893,29402054-29402652 30 1.7
01_06_1151 + 34937738-34937855,34937959-34939244 29 3.0
08_01_0963 - 9661699-9661760,9662095-9662818,9662860-9663265,966... 29 4.0
05_03_0625 - 16325827-16326495 28 5.2
06_03_1168 - 28114656-28114721,28114800-28114889,28115139-281168... 28 6.9
01_06_1462 + 37530509-37530874,37531012-37531099,37531352-375314... 28 6.9
08_02_0448 + 17239987-17240489,17240633-17241042,17241183-172414... 27 9.2
04_03_1015 - 21734381-21736534 27 9.2
03_05_0284 - 22712390-22712899,22712978-22713304,22713742-227140... 27 9.2
01_06_1749 - 39636951-39638102 27 9.2
>04_04_0916 + 29390813-29391893,29402054-29402652
Length = 559
Score = 29.9 bits (64), Expect = 1.7
Identities = 15/59 (25%), Positives = 25/59 (42%)
Frame = -3
Query: 381 VTTHSNEGKTSGAFVLSDAPVFEFQAGTNFSNVIHTQQMFTIASTVKE*HRVIKIKPAK 205
+ T+S GK G SD P+ +Q G + +H +++ S + PAK
Sbjct: 184 IFTNSTRGKKPGLVSFSDKPLERWQHGVKYCVYVHLKEIHDYTSATVTLDENAAVTPAK 242
>01_06_1151 + 34937738-34937855,34937959-34939244
Length = 467
Score = 29.1 bits (62), Expect = 3.0
Identities = 16/36 (44%), Positives = 17/36 (47%)
Frame = -1
Query: 455 RCPSRGQESQQMERNGTREIDAVGESRPTVMRERRP 348
R SR E ER G+ V E RPT R RRP
Sbjct: 106 RAGSRSGEQSGEERGGSPMHSRVSELRPTSRRTRRP 141
>08_01_0963 -
9661699-9661760,9662095-9662818,9662860-9663265,
9663488-9665037
Length = 913
Score = 28.7 bits (61), Expect = 4.0
Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 7/69 (10%)
Frame = +1
Query: 352 RLSLITVGRDSPTASI-SLVPF------LSICCDSWPREGHRDA*CPDNTEFGRTISWDS 510
RL +I + R +P S SL+ + L +CC W E + D +N ++ +
Sbjct: 586 RLDIIKLERATPLYSTTSLLTYKKHLKVLYLCCSGWTSEAYSDEDVSNNERIFEQLTPPN 645
Query: 511 SSETFALYH 537
+ E ++YH
Sbjct: 646 NLEDLSIYH 654
>05_03_0625 - 16325827-16326495
Length = 222
Score = 28.3 bits (60), Expect = 5.2
Identities = 11/29 (37%), Positives = 19/29 (65%)
Frame = +2
Query: 32 FFRPPP*DTSSKISSTVTTAAPPFKPKRI 118
FF PPP + + S+ ++ ++PPF P R+
Sbjct: 18 FFLPPP-PAAPRCSTALSPSSPPFHPTRL 45
>06_03_1168 -
28114656-28114721,28114800-28114889,28115139-28116877,
28117146-28117227,28117794-28117865,28119412-28119453,
28120352-28120401,28121253-28121372,28121635-28121707,
28121828-28122100,28122413-28122517,28122730-28122859,
28123106-28123356,28123787-28123993,28124185-28124455,
28124808-28124914
Length = 1225
Score = 27.9 bits (59), Expect = 6.9
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = -2
Query: 268 NVHDCFHGEGITSCNKNQTRKIIISVITGG 179
NV DCF + + ++ + RKI+ VI GG
Sbjct: 206 NVIDCFEKASLPNISEEEKRKILHFVIIGG 235
>01_06_1462 +
37530509-37530874,37531012-37531099,37531352-37531484,
37531567-37532326
Length = 448
Score = 27.9 bits (59), Expect = 6.9
Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Frame = -2
Query: 556 GPDGNGHDRGQTSQ-RTNPTRWSDQIRC-CLDIKRHDALHEAKN 431
G D NG + + R P RW +Q++C CL+ + + KN
Sbjct: 337 GGDDNGEIKERPLVLRNKPPRWHEQLQCWCLNFRGRVTIASVKN 380
>08_02_0448 +
17239987-17240489,17240633-17241042,17241183-17241406,
17241590-17242018,17244726-17244809
Length = 549
Score = 27.5 bits (58), Expect = 9.2
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = -1
Query: 473 SGHQASRCPSRGQESQQMERNGTREIDAVGESRP 372
+GH + CP +E+ M NG R + G ++P
Sbjct: 196 TGHSGNHCPETREEAMFMGNNGYRPQGSQGWNQP 229
>04_03_1015 - 21734381-21736534
Length = 717
Score = 27.5 bits (58), Expect = 9.2
Identities = 14/41 (34%), Positives = 23/41 (56%)
Frame = -1
Query: 509 ESHEMVRPNSVLSGHQASRCPSRGQESQQMERNGTREIDAV 387
E H +V N++L+G+ S + + Q R T+E+DAV
Sbjct: 347 EEHNLVSWNAMLTGYVRSMDLTSALQLFQQMRQETKELDAV 387
>03_05_0284 -
22712390-22712899,22712978-22713304,22713742-22714091,
22714176-22714401,22714655-22714728,22715813-22716152
Length = 608
Score = 27.5 bits (58), Expect = 9.2
Identities = 12/47 (25%), Positives = 23/47 (48%)
Frame = -3
Query: 621 ICILRVLEFFGHIARKEGHNIEGLMAMGMIEGKRLRGRIPRDGPTKF 481
+C+ + F H GHN+ +G I+G +R +P++ + F
Sbjct: 118 VCVEEQVAMFLHTI---GHNLRNRDCIGAIDGTHVRASVPKNMESSF 161
>01_06_1749 - 39636951-39638102
Length = 383
Score = 27.5 bits (58), Expect = 9.2
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = +2
Query: 71 SSTVTTAAPPFKPKRITA 124
SS + AAPPF P RIT+
Sbjct: 164 SSVASAAAPPFDPSRITS 181
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,033,231
Number of Sequences: 37544
Number of extensions: 476416
Number of successful extensions: 1334
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1298
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1332
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1513903616
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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