Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40388
         (623 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          23   1.8  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      23   1.8  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    22   5.6  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    21   9.8  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   9.8  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    21   9.8  

>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 15/52 (28%), Positives = 23/52 (44%), Gaps = 3/52 (5%)
 Frame = +2

Query: 107 PKRITASRQK*AGYTYPRGLT*GPTTSDYANYN---FAGLIFITRCYSFTVE 253
           P R+   R K  G  +   L   P +S+Y  YN   + G  F  R + F ++
Sbjct: 601 PGRLLLPRGKKEGMPFQLFLYVSPVSSEYNQYNSRIWGGYKFDKRSFGFPLD 652


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 15/52 (28%), Positives = 23/52 (44%), Gaps = 3/52 (5%)
 Frame = +2

Query: 107 PKRITASRQK*AGYTYPRGLT*GPTTSDYANYN---FAGLIFITRCYSFTVE 253
           P R+   R K  G  +   L   P +S+Y  YN   + G  F  R + F ++
Sbjct: 601 PGRLLLPRGKKEGMPFQLFLYVSPVSSEYNQYNSRIWGGYKFDKRSFGFPLD 652


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -2

Query: 229 CNKNQTRKIIISVITGGRTSRESARV 152
           CNK   RK+I  V+ G  +S  S +V
Sbjct: 203 CNKTAVRKVISGVV-GAASSVTSIQV 227


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = -2

Query: 439 AKNRSRWREMVQERLMQWASHDPQ 368
           A N  R+R+ +Q+R      H+P+
Sbjct: 337 AINHPRYRQELQKRCKWMGIHEPE 360


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 9/32 (28%), Positives = 13/32 (40%)
 Frame = -2

Query: 97   WGSRCNCT*DLRTCISGWGAKKKEQDDSWVTY 2
            W  RC    +L + +S    K  +  D W  Y
Sbjct: 926  WSCRCKFLQELSSWVSDNAHKVVDASDVWCYY 957


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = -2

Query: 439 AKNRSRWREMVQERLMQWASHDPQ 368
           A N  R+R+ +Q+R      H+P+
Sbjct: 337 AINHPRYRQELQKRCKWMGIHEPE 360


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 205,752
Number of Sequences: 438
Number of extensions: 5094
Number of successful extensions: 13
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18582456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)