Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40386
         (615 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC167.05 ||SPAC57A7.01|Usp |Schizosaccharomyces pombe|chr 1|||...    29   0.71 
SPAC869.02c |||nitric oxide dioxygenase |Schizosaccharomyces pom...    27   1.6  
SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr...    26   3.8  
SPAC631.02 |||bromodomain protein|Schizosaccharomyces pombe|chr ...    26   3.8  
SPBC3B9.09 |vps36||RBZ zinc finger protein Vps36|Schizosaccharom...    26   5.0  
SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr...    26   5.0  
SPBC26H8.09c |snf59||SWI/SNF complex subunit Snf59|Schizosacchar...    26   5.0  
SPBC13G1.09 |||bystin-family protein|Schizosaccharomyces pombe|c...    25   8.7  
SPBC16A3.12c |||triglyceride lipase-cholesterol esterase |Schizo...    25   8.7  

>SPAC167.05 ||SPAC57A7.01|Usp |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 601

 Score = 28.7 bits (61), Expect = 0.71
 Identities = 20/85 (23%), Positives = 40/85 (47%), Gaps = 6/85 (7%)
 Frame = +1

Query: 58  KLEIDIYPFHHLNRQNVLSKFCNYFNQQNNI------SLYKKKLLVFYVNYISNKNNKSS 219
           ++E++I   HH   ++++ +  +Y      +      S  K  LL  + NY+ NK++   
Sbjct: 506 EVEVNIEVIHHEKAKHLIIEMIDYIEPSLVVMGSRGRSHLKGVLLGSFSNYLVNKSSVPV 565

Query: 220 MRAKKTRKQKRNS*STKLHLINRVS 294
           M A+K  K+ +     +  L N +S
Sbjct: 566 MVARKKLKKNKQRLGNQSRLANNLS 590


>SPAC869.02c |||nitric oxide dioxygenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 427

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 13/35 (37%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
 Frame = +1

Query: 127 YFNQQNNISLYKKKLLVF-YVNYISNKNNKSSMRA 228
           YFN+ + ISL + ++L F  +NY  N ++ +S+ A
Sbjct: 71  YFNKAHQISLSQPRILAFALLNYAKNIDDLTSLSA 105


>SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1516

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = +1

Query: 67  IDIYPFHHLNRQNVLSKFC-NYFNQQNNISLYK 162
           +DIY F H  ++N   +FC NY N++     Y+
Sbjct: 456 LDIYGFEHF-KKNSFEQFCINYANEKLQQEFYR 487


>SPAC631.02 |||bromodomain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 727

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +1

Query: 61  LEIDIYPFHHLNRQNVLSKFCNYFN 135
           L +DIYP      QN L++ CNY +
Sbjct: 572 LSVDIYPPITYEMQNELAEQCNYLS 596


>SPBC3B9.09 |vps36||RBZ zinc finger protein
           Vps36|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 467

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 12/41 (29%), Positives = 20/41 (48%)
 Frame = +1

Query: 136 QQNNISLYKKKLLVFYVNYISNKNNKSSMRAKKTRKQKRNS 258
           + NN +LY  K  +FYV+ +  K N   ++    R  +  S
Sbjct: 39  RHNNGTLYLTKKHIFYVDSVDPKKNSLKIKISDIRDVQHTS 79


>SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1471

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 11/26 (42%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
 Frame = +1

Query: 67  IDIYPFHHLNRQNVLSKFC-NYFNQQ 141
           +DIY F H  + N + +FC NY N++
Sbjct: 438 VDIYGFEHFEK-NSMEQFCINYANEK 462


>SPBC26H8.09c |snf59||SWI/SNF complex subunit
           Snf59|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 515

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 18/52 (34%), Positives = 28/52 (53%)
 Frame = +1

Query: 133 NQQNNISLYKKKLLVFYVNYISNKNNKSSMRAKKTRKQKRNS*STKLHLINR 288
           + QN+ S ++ K ++      S  N+K  MR +  RK+ R S  TKL  +NR
Sbjct: 462 DNQNSPSPFQGKDILTLAQGASFYNSKV-MRTRNLRKEARLSYYTKLRGVNR 512


>SPBC13G1.09 |||bystin-family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 449

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -2

Query: 404 Y*LDYEILDFLEFLFVKW 351
           Y L Y++LD L F F++W
Sbjct: 362 YALPYKVLDSLVFYFMRW 379


>SPBC16A3.12c |||triglyceride lipase-cholesterol esterase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 443

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 14/56 (25%), Positives = 28/56 (50%)
 Frame = +2

Query: 332 TEYIIDTISQIEIQGNLKFHNQVSKRC*IPVIIFPQSLSFVKSSS*IVDIYFKTKF 499
           + Y +D I  +++   + +H    +RC +P + F Q++ +      IVD+  K  F
Sbjct: 246 SNYFVDYI--VKVNPKIMYH-LFGRRCLLPSVTFWQNICYPPIFVKIVDVSLKILF 298


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,337,192
Number of Sequences: 5004
Number of extensions: 43376
Number of successful extensions: 108
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 269634532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)