Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40384
         (682 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29B5.01 |atf1|mts1, sss1, gad7|transcription factor Atf1|Sch...    32   0.067
SPAC21E11.03c |pcr1|mts2|transcription factor Pcr1|Schizosacchar...    31   0.12 
SPBC2F12.09c |atf21||transcription factor Atf21|Schizosaccharomy...    30   0.27 
SPAC3G6.06c |rad2|fen1|FEN-1 endonuclease|Schizosaccharomyces po...    29   0.82 
SPCC297.06c ||SPCC737.01c|mitochondrial ribosomal protein subuni...    28   1.1  
SPAC11E3.14 |||conserved protein|Schizosaccharomyces pombe|chr 1...    28   1.1  
SPAC22F3.02 |atf31||transcription factor Atf31|Schizosaccharomyc...    28   1.4  
SPAC1002.03c |gls2||glucosidase II Gls2|Schizosaccharomyces pomb...    26   4.4  
SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog Rhp16|Schizo...    25   7.7  
SPAC15E1.04 |||thymidylate synthase |Schizosaccharomyces pombe|c...    25   7.7  
SPBC776.18c |pmh1|mcr1|transcription factor TFIIH complex subuni...    25   7.7  
SPAC3F10.17 |||ribosome biogenesis protein Ltv1|Schizosaccharomy...    25   7.7  

>SPBC29B5.01 |atf1|mts1, sss1, gad7|transcription factor
           Atf1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 566

 Score = 32.3 bits (70), Expect = 0.067
 Identities = 14/26 (53%), Positives = 20/26 (76%)
 Frame = +1

Query: 604 QRNRVAASKCRRRKLERISKLEEKVK 681
           +RNR AA KCR+RK + +S L+ KV+
Sbjct: 480 ERNRQAALKCRQRKKQWLSNLQAKVE 505


>SPAC21E11.03c |pcr1|mts2|transcription factor
           Pcr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 171

 Score = 31.5 bits (68), Expect = 0.12
 Identities = 15/29 (51%), Positives = 21/29 (72%)
 Frame = +1

Query: 586 KLERKRQRNRVAASKCRRRKLERISKLEE 672
           K  R  +RNR+AASK R++K E I +LE+
Sbjct: 12  KRRRILERNRIAASKFRQKKKEWIKELEQ 40


>SPBC2F12.09c |atf21||transcription factor Atf21|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 355

 Score = 30.3 bits (65), Expect = 0.27
 Identities = 14/30 (46%), Positives = 20/30 (66%)
 Frame = +1

Query: 583 IKLERKRQRNRVAASKCRRRKLERISKLEE 672
           +K  R  +RNR+AASKCR++K      LE+
Sbjct: 268 MKRRRFLERNRIAASKCRQKKKLWTQNLEK 297


>SPAC3G6.06c |rad2|fen1|FEN-1 endonuclease|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 380

 Score = 28.7 bits (61), Expect = 0.82
 Identities = 19/61 (31%), Positives = 30/61 (49%)
 Frame = +1

Query: 457 ICRFGQAARAIPHSHREDEPQTVPSAASTPPLSPIDMDTQEKIKLERKRQRNRVAASKCR 636
           I R  +A++ IP    +   + VPS+   P      +DT+ K   +RKR  N+   SK +
Sbjct: 326 INRLEKASKTIPQGRLDSFFKPVPSSPKKP------VDTKSKGSAKRKRDSNKGGESKKK 379

Query: 637 R 639
           R
Sbjct: 380 R 380


>SPCC297.06c ||SPCC737.01c|mitochondrial ribosomal protein subunit
           8|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 230

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 12/32 (37%), Positives = 21/32 (65%)
 Frame = +1

Query: 586 KLERKRQRNRVAASKCRRRKLERISKLEEKVK 681
           +L++K+QR+   ASK    +LER  +L  K++
Sbjct: 173 RLKQKKQRSEFRASKREMERLERDQELRNKIE 204


>SPAC11E3.14 |||conserved protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 588

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +2

Query: 401 EALDKLHHGEAVTPLGRRVYADLDRPLERYP 493
           EA + L+H E VT   ++ +   DRP+  YP
Sbjct: 86  EATEALYHAEQVTEERKKHFEHHDRPIGSYP 116


>SPAC22F3.02 |atf31||transcription factor Atf31|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 209

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 6/61 (9%)
 Frame = +1

Query: 514 PQTVPSAASTPPLSPIDMDTQEKI-KLERKRQ-----RNRVAASKCRRRKLERISKLEEK 675
           P  +  A+   P   +D    E   KL   +Q     RNR AA KCR +K + +  L+++
Sbjct: 93  PSIISEASHNSPSRELDDSGDENTSKLTGTKQSMLKARNRQAAQKCRIKKKKYLQTLQDQ 152

Query: 676 V 678
           V
Sbjct: 153 V 153


>SPAC1002.03c |gls2||glucosidase II Gls2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 923

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +1

Query: 487 IPHSHREDEPQTVPSAASTPPLSPIDMDTQEKIKLER 597
           I H   E+   T+  + S PP+SP    +Q+ +K+ER
Sbjct: 844 IRHFSYENGILTMKDSHSNPPVSPKYSSSQKHLKVER 880


>SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog
           Rhp16|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 963

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 17/49 (34%), Positives = 21/49 (42%)
 Frame = +1

Query: 529 SAASTPPLSPIDMDTQEKIKLERKRQRNRVAASKCRRRKLERISKLEEK 675
           S  STPPLS  D  T      +          S  R+R L R S L++K
Sbjct: 177 SQHSTPPLSISDTSTHTGSSTDNVEANPNTGFSSARKRSL-RSSNLKKK 224


>SPAC15E1.04 |||thymidylate synthase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 625

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 17/48 (35%), Positives = 26/48 (54%)
 Frame = -1

Query: 292 DQFFQLRRSELQHCKSGEERTGAAIRERFPPRPTSKVRGLLRFSTGPL 149
           +Q+  L R  L++ +S  +RTG   R  F P    ++R  LR +T PL
Sbjct: 331 EQYLNLIRYILENGQSRPDRTGTGTRSVFAP---PQLRFSLRNNTLPL 375


>SPBC776.18c |pmh1|mcr1|transcription factor TFIIH complex subunit
           Pmh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 318

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +1

Query: 568 DTQEKIKLERKRQRNRVAASKCRRRKLERI 657
           +T+EK+K   K+ R+ +AA+  R     RI
Sbjct: 127 ETEEKVKQYEKQNRDSIAANSARAAAEARI 156


>SPAC3F10.17 |||ribosome biogenesis protein Ltv1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 386

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +2

Query: 353 AVAPTEEQEMYARPFVEALDKLHHGEAVTPLGR 451
           A    +E E YA+PFVE  +K +   A    G+
Sbjct: 190 ASGKADESEFYAQPFVEEGEKDYDEAAAAKAGK 222


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,872,046
Number of Sequences: 5004
Number of extensions: 58230
Number of successful extensions: 203
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 196
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 203
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)