Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40384
         (682 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    23   2.7  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    23   2.7  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    23   3.6  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    22   4.7  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    22   4.7  

>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = +2

Query: 395 FVEALDKLHHGEAVTPLGRRVYADLDRPLERYPTPIVKTS 514
           F+ AL  +H   A  P  +R+Y DL     +   P+V TS
Sbjct: 13  FLSAL-VVHGAVAGNPDAKRLYDDLLSNYNKLVRPVVNTS 51


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = +2

Query: 395 FVEALDKLHHGEAVTPLGRRVYADLDRPLERYPTPIVKTS 514
           F+ AL  +H   A  P  +R+Y DL     +   P+V TS
Sbjct: 13  FLSAL-VVHGAVAGNPDAKRLYDDLLSNYNKLVRPVVNTS 51


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = +1

Query: 478 ARAIPHSHREDEPQTVPSAASTPPLSPI 561
           AR IPH+   D   TVP   S   +S +
Sbjct: 424 ARHIPHASVTDSENTVPRYLSPDVISAL 451


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 6/15 (40%), Positives = 11/15 (73%)
 Frame = -1

Query: 670 LPALKYVPAYVVYIW 626
           L ++  +P Y++YIW
Sbjct: 537 LSSMLCIPGYMIYIW 551


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 6/15 (40%), Positives = 11/15 (73%)
 Frame = -1

Query: 670 LPALKYVPAYVVYIW 626
           L ++  +P Y++YIW
Sbjct: 590 LSSMLCIPGYMIYIW 604


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 200,897
Number of Sequences: 438
Number of extensions: 4605
Number of successful extensions: 15
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20708550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)