Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40382
         (614 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1486.06 |||nicotinate phosphoribosyltransferase |Schizosacch...    36   0.006
SPBC2A9.11c ||SPBC2D10.01c|nuclear export factor|Schizosaccharom...    29   0.53 
SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces...    28   0.93 
SPBC1921.07c ||SPBC21D10.13|SAGA complex subunit Sgf29 |Schizosa...    27   2.2  
SPAC1002.19 |urg1||GTP cyclohydrolase II |Schizosaccharomyces po...    26   3.8  
SPAC12G12.14c |pfs2||WD repeat protein Pfs2|Schizosaccharomyces ...    26   5.0  
SPBC776.12c |hsk1||serine/threonine protein kinase Hsk1|Schizosa...    25   6.6  
SPBC21.04 |med8|sep15|mediator complex subunit Med8|Schizosaccha...    25   8.7  

>SPAC1486.06 |||nicotinate phosphoribosyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 410

 Score = 35.5 bits (78), Expect = 0.006
 Identities = 18/63 (28%), Positives = 32/63 (50%)
 Frame = +2

Query: 29  NQDGSVTWREWAPGAHSLHLRGEFNGWDSKSHPFAKKEYGKWEIQIPANPDGSCALKHDS 208
           NQ+     RE   G  +LHL  E   W  K+ P+ K+ + ++  +   +P+ S +L +DS
Sbjct: 46  NQEAYNWLREQIRGLRNLHLLPEEEQWLRKNCPYLKESFYEFMHEFEFDPENSISLNYDS 105

Query: 209 RVQ 217
             +
Sbjct: 106 ETK 108


>SPBC2A9.11c ||SPBC2D10.01c|nuclear export
           factor|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 395

 Score = 29.1 bits (62), Expect = 0.53
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +1

Query: 340 KVDKPKSLRIYECHVGIATSEGKVGSYNE 426
           ++    S+ +YE H  IA  +G VG YN+
Sbjct: 196 RIQNEFSVLVYEIHARIALEKGDVGEYNQ 224


>SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 466

 Score = 28.3 bits (60), Expect = 0.93
 Identities = 22/89 (24%), Positives = 37/89 (41%), Gaps = 2/89 (2%)
 Frame = +1

Query: 193 IETRLPCPNHSERQLVQDITVASYVKPHEGFTYQHF--IYKPEQPYKFKHPKVDKPKSLR 366
           I TR+  P     ++V+D+      + H+   Y      +K  Q  K K  K +K    +
Sbjct: 124 INTRIVNPTGELLKIVKDVDKLLLKRDHKQLDYDRHRSSFKKLQEKKDKSLKDEK----K 179

Query: 367 IYECHVGIATSEGKVGSYNEFRENVLPRI 453
           +YE       S  +   YNE  +  LP++
Sbjct: 180 LYEAETAFEQSSQEYEYYNEMLKEELPKL 208


>SPBC1921.07c ||SPBC21D10.13|SAGA complex subunit Sgf29
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 244

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
 Frame = +1

Query: 241 QDITVASYVKPHEGFT-YQHFIYKPEQPYKFKHPKVDKPKSLRIYECHVGIATSE 402
           +D+T + +VK HE     +  + K E+ YK      D P   RI  C  GI TSE
Sbjct: 9   EDVT-SMWVKFHESLNPIRSSLIKQEECYKTVDGD-DNPIEERIKACDAGIQTSE 61


>SPAC1002.19 |urg1||GTP cyclohydrolase II |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 439

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = -3

Query: 513 KRICMFLYGHDLYSIVTLFLDSGQDVLAEL-VVRAH 409
           K + M  YGH   S+   +LD G DV   + + RAH
Sbjct: 125 KIVAMDPYGHLTPSVFKKYLDEGYDVRPTIAITRAH 160


>SPAC12G12.14c |pfs2||WD repeat protein Pfs2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 509

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 15/43 (34%), Positives = 20/43 (46%)
 Frame = +3

Query: 459 TGLQCYTDHGHKGTCIFASFGYQVTSFFAASSRYGTPCELKQL 587
           TG    T HGHK T + ASF     S + A+    + C +  L
Sbjct: 237 TGTCIATLHGHKNTIMQASFQKNFGSNYLATVSRDSTCRVFDL 279


>SPBC776.12c |hsk1||serine/threonine protein kinase
           Hsk1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 507

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 13/37 (35%), Positives = 17/37 (45%)
 Frame = +2

Query: 71  AHSLHLRGEFNGWDSKSHPFAKKEYGKWEIQIPANPD 181
           A  LH     N WD +S    +  +GK   +IP N D
Sbjct: 85  AEDLHYGRYINDWDIQSEVLKESSFGK--EKIPVNED 119


>SPBC21.04 |med8|sep15|mediator complex subunit
           Med8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 200

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 17/62 (27%), Positives = 28/62 (45%)
 Frame = +2

Query: 245 ISPWPVT*SHTRVLLINILFISQNSPTNSSIQR*TSQSLFASTSVTLV*QRPRVKWALTT 424
           +SPWP    +  +LL  I  +S N   +S   + T  S++ S    +  Q P +   L T
Sbjct: 40  LSPWPTIHKNFNILLSQIHSLSNNLAAHSHTLQTT--SIYPSLEFPVKEQEPLLTTLLRT 97

Query: 425 SS 430
            +
Sbjct: 98  KA 99


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,827,603
Number of Sequences: 5004
Number of extensions: 64556
Number of successful extensions: 190
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 181
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 190
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 269634532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)