Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40382
(614 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0064 - 19375497-19375580,19375659-19375733,19376359-193765... 103 8e-23
06_03_1473 - 30382528-30382731,30382814-30382930,30383048-303831... 82 4e-16
04_03_0846 - 20249085-20249192,20249418-20249501,20249687-202498... 78 6e-15
06_02_0364 + 15178583-15178881,15179652-15179723,15179853-151799... 38 0.008
02_01_0008 - 50576-50671,50767-50829,50918-50961,51048-51129,522... 30 1.3
01_05_0509 + 22811184-22812038,22813493-22814020 30 1.3
01_06_1258 + 35806557-35806932,35807517-35807679,35807789-358078... 28 5.1
09_04_0163 - 15249816-15249920,15250032-15250163,15250463-152506... 27 8.9
02_04_0329 + 22081052-22082434 27 8.9
>02_04_0064 -
19375497-19375580,19375659-19375733,19376359-19376514,
19377016-19377093,19377328-19377428,19377570-19377717,
19378172-19378316,19378803-19378906,19380257-19380385,
19380526-19380636,19380734-19380863,19381915-19382034,
19382360-19382481,19382965-19383048,19383241-19383357,
19383442-19383522,19384138-19384197,19384398-19384440,
19384528-19384626,19385353-19385564,19385964-19386091,
19386246-19386396
Length = 825
Score = 103 bits (248), Expect = 8e-23
Identities = 53/110 (48%), Positives = 70/110 (63%), Gaps = 2/110 (1%)
Frame = +1
Query: 289 YQHFIYKP--EQPYKFKHPKVDKPKSLRIYECHVGIATSEGKVGSYNEFRENVLPRIKKQ 462
Y Y P E+ Y FKHP+ +PKSLRIYE HVG++++E K+ +Y FR+ VLPRIKK
Sbjct: 287 YNGIYYDPPEEEKYIFKHPQPKRPKSLRIYETHVGMSSTEPKINTYANFRDEVLPRIKKL 346
Query: 463 GYNAIQIMAIKEHAYSLRSAIKLPAFLLPAVVTGLLAN*NS**IRAHEIG 612
GYNA+QIMAI+EHAY + F P+ G + S +AHE+G
Sbjct: 347 GYNAVQIMAIQEHAYYGSFGYHVTNFFAPSSRFGTPEDLKSLIDKAHELG 396
Score = 81.0 bits (191), Expect = 7e-16
Identities = 35/73 (47%), Positives = 49/73 (67%)
Frame = +2
Query: 2 GYKYYGPQFNQDGSVTWREWAPGAHSLHLRGEFNGWDSKSHPFAKKEYGKWEIQIPANPD 181
GY+ +G + +G VT+REWAPGAHS L G+FN W+ + +K E+G WEI +P N D
Sbjct: 188 GYEKFGFNHSAEG-VTYREWAPGAHSAALVGDFNNWNPNADRMSKNEFGVWEIFLPNNAD 246
Query: 182 GSCALKHDSRVQI 220
GS + H SRV++
Sbjct: 247 GSSPIPHGSRVKV 259
>06_03_1473 -
30382528-30382731,30382814-30382930,30383048-30383129,
30383211-30383278,30383444-30383545,30383994-30384122,
30384561-30384623,30384781-30384897,30385210-30386116,
30386225-30386494,30386929-30386998,30387114-30387273
Length = 762
Score = 81.8 bits (193), Expect = 4e-16
Identities = 34/62 (54%), Positives = 45/62 (72%)
Frame = +1
Query: 322 YKFKHPKVDKPKSLRIYECHVGIATSEGKVGSYNEFRENVLPRIKKQGYNAIQIMAIKEH 501
Y FKHP+ KP + RIYE HVG++ E +V +Y EF +NVLPRI+ YN +Q+MAI EH
Sbjct: 168 YVFKHPRPPKPDAPRIYEAHVGMSGEEPEVSTYREFADNVLPRIRANNYNTVQLMAIMEH 227
Query: 502 AY 507
+Y
Sbjct: 228 SY 229
Score = 60.9 bits (141), Expect = 8e-10
Identities = 28/72 (38%), Positives = 42/72 (58%)
Frame = +2
Query: 2 GYKYYGPQFNQDGSVTWREWAPGAHSLHLRGEFNGWDSKSHPFAKKEYGKWEIQIPANPD 181
GY +G DG+ +REWAP A L GEFN W+ H K ++G W I+I ++ +
Sbjct: 54 GYLKFGIN-TVDGATIYREWAPAAQEAQLIGEFNNWNGAKHKMEKDKFGIWSIKI-SHVN 111
Query: 182 GSCALKHDSRVQ 217
G A+ H+S+V+
Sbjct: 112 GKPAIPHNSKVK 123
Score = 46.8 bits (106), Expect = 1e-05
Identities = 25/56 (44%), Positives = 32/56 (57%)
Frame = +3
Query: 426 VPRERPAQNQETGLQCYTDHGHKGTCIFASFGYQVTSFFAASSRYGTPCELKQLID 593
+PR R L +H + +ASFGY VT+FFA SSR GTP +LK L+D
Sbjct: 208 LPRIRANNYNTVQLMAIMEHSY-----YASFGYHVTNFFAVSSRSGTPEDLKYLVD 258
>04_03_0846 -
20249085-20249192,20249418-20249501,20249687-20249803,
20249899-20249979,20250563-20250622,20250762-20250804,
20250899-20250997,20251260-20251531,20251765-20251886,
20252376-20252517
Length = 375
Score = 77.8 bits (183), Expect = 6e-15
Identities = 35/73 (47%), Positives = 47/73 (64%)
Frame = +2
Query: 2 GYKYYGPQFNQDGSVTWREWAPGAHSLHLRGEFNGWDSKSHPFAKKEYGKWEIQIPANPD 181
GY+ G + +G +T+REWAPGA S L G+FN W+ + + EYG WEI +P N D
Sbjct: 203 GYEKLGFTRSAEG-ITYREWAPGAQSAALVGDFNNWNPNADTMTRNEYGVWEISLPNNAD 261
Query: 182 GSCALKHDSRVQI 220
GS A+ H SRV+I
Sbjct: 262 GSPAIPHGSRVKI 274
Score = 41.1 bits (92), Expect = 7e-04
Identities = 17/38 (44%), Positives = 25/38 (65%), Gaps = 2/38 (5%)
Frame = +1
Query: 289 YQHFIYKP--EQPYKFKHPKVDKPKSLRIYECHVGIAT 396
Y Y P E+ Y F+HP+ +P SLRIYE H+G+++
Sbjct: 302 YNGIYYDPPEEEKYVFQHPQPKRPNSLRIYESHIGMSS 339
>06_02_0364 +
15178583-15178881,15179652-15179723,15179853-15179917,
15180890-15180934,15182493-15183170,15183376-15183410,
15183647-15183736,15183896-15183985,15184164-15184262,
15184938-15185013,15185473-15185588
Length = 554
Score = 37.5 bits (83), Expect = 0.008
Identities = 17/30 (56%), Positives = 19/30 (63%)
Frame = +1
Query: 412 GSYNEFRENVLPRIKKQGYNAIQIMAIKEH 501
G N R VLP IK GYNAIQ++ I EH
Sbjct: 420 GDLNGRRSKVLPHIKDAGYNAIQLIGIVEH 449
Score = 32.3 bits (70), Expect = 0.31
Identities = 11/23 (47%), Positives = 20/23 (86%)
Frame = +3
Query: 525 QVTSFFAASSRYGTPCELKQLID 593
+VT++F+ SSR+G+P + K+L+D
Sbjct: 491 EVTNYFSVSSRFGSPDDFKKLVD 513
>02_01_0008 -
50576-50671,50767-50829,50918-50961,51048-51129,
52205-52371,52502-52654,52780-52960,53452-53540,
53599-53799,54804-55147,55397-55626
Length = 549
Score = 30.3 bits (65), Expect = 1.3
Identities = 23/85 (27%), Positives = 36/85 (42%), Gaps = 8/85 (9%)
Frame = -3
Query: 483 DLYSIVTLFLDSGQDVLAELVVRAHFTLGRCYTN--------VTLVDAKRLWLVYLWMLE 328
+LY+ +L D L++L AH T+G N TL+ WL L L
Sbjct: 286 ELYACCIEYLILESDNLSKLFPNAHLTIGSMTLNSHVFFAILTTLIVMPTTWLRDLSCLS 345
Query: 327 FVGLFWLINKMLISKTLVWLHVTGH 253
++ +I +L+ L W+ V H
Sbjct: 346 YLSAGGVIASILVVVCLCWVGVVDH 370
>01_05_0509 + 22811184-22812038,22813493-22814020
Length = 460
Score = 30.3 bits (65), Expect = 1.3
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = -3
Query: 354 WLVYLWMLEFVGLFWLINKMLISKTLVWLHVTGHG 250
WL L ML +V L++ + ++ +LVW V G G
Sbjct: 205 WLKNLSMLAYVSAVGLVSSVALTASLVWAGVAGKG 239
>01_06_1258 +
35806557-35806932,35807517-35807679,35807789-35807837,
35807943-35808866,35808954-35809049,35809142-35809257,
35809345-35809447,35809570-35809658,35809750-35809900,
35809995-35810141,35810238-35810366,35810451-35810529,
35810616-35810725
Length = 843
Score = 28.3 bits (60), Expect = 5.1
Identities = 11/17 (64%), Positives = 13/17 (76%)
Frame = -3
Query: 363 KRLWLVYLWMLEFVGLF 313
KR+WLV LW+ VGLF
Sbjct: 291 KRIWLVALWLAVNVGLF 307
>09_04_0163 -
15249816-15249920,15250032-15250163,15250463-15250629,
15251259-15251448,15252530-15252661,15253275-15253382,
15253513-15253608,15253702-15253809,15253917-15254089,
15255026-15255401,15255887-15256030,15256125-15256799,
15256917-15256982,15257082-15257249
Length = 879
Score = 27.5 bits (58), Expect = 8.9
Identities = 18/74 (24%), Positives = 31/74 (41%)
Frame = +1
Query: 136 KGVRQMGDSNPRKSRWFVCIETRLPCPNHSERQLVQDITVASYVKPHEGFTYQHFIYKPE 315
KGV ++ + + + V + T L CPN + + S +K + + F+Y+
Sbjct: 216 KGVNKLSEDDVLRCFMVVALSTFL-CPNSDTHPSPKYLEPLSDIKSSSKWNWSKFVYEWL 274
Query: 316 QPYKFKHPKVDKPK 357
Y K K K K
Sbjct: 275 MTYIAKFQKESKSK 288
>02_04_0329 + 22081052-22082434
Length = 460
Score = 27.5 bits (58), Expect = 8.9
Identities = 12/38 (31%), Positives = 19/38 (50%)
Frame = +2
Query: 140 EYGKWEIQIPANPDGSCALKHDSRVQIIVNDNLYRISP 253
E WE DG A + +++ I+VN+ LY + P
Sbjct: 322 ELNSWETMADGLGDGWPARQAGTKLGIVVNEELYTLEP 359
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,465,475
Number of Sequences: 37544
Number of extensions: 421300
Number of successful extensions: 1003
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 973
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1001
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1478421500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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