Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40380
(613 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyce... 34 0.019
SPAC11D3.17 |||zinc finger protein|Schizosaccharomyces pombe|chr... 33 0.043
SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces ... 31 0.099
SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces... 30 0.23
SPAC144.09c |sfc2||RNA polymerase III transcription factor TFIII... 29 0.40
SPAC1B1.01 |||transcription factor Rdp1|Schizosaccharomyces pomb... 29 0.40
SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces p... 28 0.93
SPAC6G10.12c |ace2||transcription factor Ace2|Schizosaccharomyce... 28 0.93
SPAC24C9.08 |||vacuolar carboxypeptidase |Schizosaccharomyces po... 28 0.93
SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr 1|... 27 2.8
SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces... 27 2.8
SPAPYUG7.03c |mid2||anillin homologue Mid2|Schizosaccharomyces p... 26 3.7
SPAC25B8.19c ||SPAC683.01c|transcription factor, zf-fungal binuc... 26 4.9
SPBC19C7.10 |||transcription factor |Schizosaccharomyces pombe|c... 26 4.9
SPAC926.09c |fas1||fatty acid synthase beta subunit Fas1|Schizos... 25 6.5
SPBC21B10.06c |||sequence orphan|Schizosaccharomyces pombe|chr 2... 25 6.5
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces... 25 6.5
SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S... 25 6.5
SPCPB1C11.01 |amt1||ammonium transporter Amt1|Schizosaccharomyce... 25 6.5
SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces po... 25 8.6
SPAC1782.08c |rex3||exonuclease Rex3 |Schizosaccharomyces pombe|... 25 8.6
>SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 681
Score = 33.9 bits (74), Expect = 0.019
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +3
Query: 519 CGKRFSDDVSYEGHYIKHTENQPFKCSECPK 611
C KRF+ + + H HT +PF+CS C K
Sbjct: 577 CNKRFTRAYNLKSHMNTHTNYRPFQCSICKK 607
>SPAC11D3.17 |||zinc finger protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 585
Score = 32.7 bits (71), Expect = 0.043
Identities = 13/45 (28%), Positives = 22/45 (48%)
Frame = +3
Query: 471 TQQNLSFGSKTI*CDRCGKRFSDDVSYEGHYIKHTENQPFKCSEC 605
T+ +L + CD+C KRF+ + H H++ +P C C
Sbjct: 20 TEPSLIDSKRVFPCDQCAKRFTRHENLTRHKACHSKAEPIPCPYC 64
>SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 582
Score = 31.5 bits (68), Expect = 0.099
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +1
Query: 424 CYECDKLFNKACYLTQHNKTFHSGAKPF 507
C EC K F ++ +L +H ++ H+ KPF
Sbjct: 425 CPECSKKFKRSEHLRRHIRSLHTSEKPF 452
>SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 567
Score = 30.3 bits (65), Expect = 0.23
Identities = 16/47 (34%), Positives = 22/47 (46%)
Frame = +3
Query: 462 PNATQQNLSFGSKTI*CDRCGKRFSDDVSYEGHYIKHTENQPFKCSE 602
PNA Q + K C+ C + F+ + H HT +PF CSE
Sbjct: 60 PNAPPQKV----KQYVCETCTRAFARLEHLKRHIRSHTNEKPFTCSE 102
>SPAC144.09c |sfc2||RNA polymerase III transcription factor
TFIIIA|Schizosaccharomyces pombe|chr 1|||Manual
Length = 374
Score = 29.5 bits (63), Expect = 0.40
Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
Frame = +3
Query: 477 QNLSFGSKTI*C--DRCGKRFSDDVSYEGHYIKHTENQPFKC 596
+NL K C + CGK++S E H H+ +PF C
Sbjct: 14 KNLRSAKKIFHCPYEECGKKYSRPSLLEQHLRTHSNERPFVC 55
>SPAC1B1.01 |||transcription factor Rdp1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 478
Score = 29.5 bits (63), Expect = 0.40
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +1
Query: 421 KCYECDKLFNKACYLTQHNKTFH 489
+C +CD +F K LT H +T+H
Sbjct: 140 RCDKCDMMFVKQSGLTNHKRTYH 162
>SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1272
Score = 28.3 bits (60), Expect = 0.93
Identities = 20/72 (27%), Positives = 37/72 (51%), Gaps = 3/72 (4%)
Frame = -1
Query: 304 QGSREISFENHNSLYSQVHYILYFKYLKLAYIQS*NVISSFYCF---TAYCVSI*IDFDI 134
Q ++E+S E+ + + ++ + L Y+KL+ S N +F F + C+ +D +
Sbjct: 1106 QCTKEVSAEDVTNFWLELVFTLLLVYIKLSLKGSINSQITFKDFQQELSLCIENLLDSFL 1165
Query: 133 FRTISYGCLLNT 98
+T SY LNT
Sbjct: 1166 SKTNSYKIALNT 1177
>SPAC6G10.12c |ace2||transcription factor Ace2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 533
Score = 28.3 bits (60), Expect = 0.93
Identities = 9/29 (31%), Positives = 15/29 (51%)
Frame = +3
Query: 519 CGKRFSDDVSYEGHYIKHTENQPFKCSEC 605
C KR + + E H H ++P++C C
Sbjct: 450 CNKRIARKYNVESHIQTHLSDRPYRCDLC 478
>SPAC24C9.08 |||vacuolar carboxypeptidase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 596
Score = 28.3 bits (60), Expect = 0.93
Identities = 17/49 (34%), Positives = 22/49 (44%)
Frame = +2
Query: 65 NMEYEYSLSPGSVKEATVTYSPENVKVYSYGYAVGGKTIKRGDDVLGLD 211
N + E S SPGS ++ + K Y K K GDDV G+D
Sbjct: 61 NDKQEMSHSPGSCMDSESAAVSTSAKCYIPPVLTPAKEPKLGDDVSGID 109
>SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1372
Score = 26.6 bits (56), Expect = 2.8
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +3
Query: 513 DRCGKRFSDDVSYEGHYIKHTEN 581
++C K S D + E H++KHT N
Sbjct: 413 EKCVKLVSLDTANEKHFLKHTPN 435
>SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 565
Score = 26.6 bits (56), Expect = 2.8
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +1
Query: 418 HKCYECDKLFNKACYLTQHNKTFHSGAKP 504
+KC C K F + + T+H +T H+G KP
Sbjct: 26 YKCPLCTKAFYRLEHQTRHIRT-HTGEKP 53
>SPAPYUG7.03c |mid2||anillin homologue Mid2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 704
Score = 26.2 bits (55), Expect = 3.7
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = +2
Query: 398 SLSQCRFTNVMNAINCLTRPAT*RNTTK 481
SL RFTNV++A + LTR R +K
Sbjct: 318 SLPDPRFTNVLSAFDALTRTYLLRQNSK 345
>SPAC25B8.19c ||SPAC683.01c|transcription factor, zf-fungal
binuclear cluster type |Schizosaccharomyces pombe|chr
1|||Manual
Length = 522
Score = 25.8 bits (54), Expect = 4.9
Identities = 11/29 (37%), Positives = 14/29 (48%)
Frame = +3
Query: 510 CDRCGKRFSDDVSYEGHYIKHTENQPFKC 596
C C + FS S + H HT +PF C
Sbjct: 470 CTECLQGFSRPSSLKIHTYSHTGERPFVC 498
>SPBC19C7.10 |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 432
Score = 25.8 bits (54), Expect = 4.9
Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 5/35 (14%)
Frame = +1
Query: 235 NRGYNGLANKENYG-----SQMKSPASPESAKAEN 324
N+G NG+AN+ N G SQ++ P K EN
Sbjct: 320 NKGMNGVANQVNKGVTGVASQVRKPVGKLEKKFEN 354
>SPAC926.09c |fas1||fatty acid synthase beta subunit
Fas1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2073
Score = 25.4 bits (53), Expect = 6.5
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = -1
Query: 283 FENHNSLYSQVHYILYFKY 227
FEN N+L +VH FKY
Sbjct: 1232 FENRNALKKEVHLDFLFKY 1250
>SPBC21B10.06c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 470
Score = 25.4 bits (53), Expect = 6.5
Identities = 10/36 (27%), Positives = 22/36 (61%)
Frame = -1
Query: 271 NSLYSQVHYILYFKYLKLAYIQS*NVISSFYCFTAY 164
+S + +HY+ + K + L+YI ++I +C+T +
Sbjct: 129 SSAMASLHYLKFVKIIALSYICFSSLIRICHCWTYF 164
>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3699
Score = 25.4 bits (53), Expect = 6.5
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = +3
Query: 459 LPNATQQNLSFGSKTI*CDRCGKRFSDDVSYEGHYIK 569
LP++T+ NLS + I D C + F +D + +K
Sbjct: 3230 LPSSTESNLSLFADNILPDYCKQLFKEDFIVNSNGLK 3266
>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
Tor2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2337
Score = 25.4 bits (53), Expect = 6.5
Identities = 15/45 (33%), Positives = 24/45 (53%)
Frame = -1
Query: 457 RPC*TIYRIHNICEPALRKTSSFDFSQLAAYSVPWMTQPESHCFR 323
+ C +Y +N +P +RKT+S SQL A P ++Q H +
Sbjct: 481 KDCVVVYLENN--DPEVRKTASITCSQLFARD-PILSQTSDHAIQ 522
>SPCPB1C11.01 |amt1||ammonium transporter Amt1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 497
Score = 25.4 bits (53), Expect = 6.5
Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
Frame = +2
Query: 26 SPVQYNNNEICGHNMEYEYSLSPGSVKEATVTYSPENVKVYSYGYAVG-GKTIKRGDDVL 202
S Y I H ++ Y L+ +V A +++ ++ Y G + R D+VL
Sbjct: 368 SGTAYTGGWITHHYIQLGYQLAD-TVSCAAYSFAVSCALLFVMNYIPGLSLRVSREDEVL 426
Query: 203 GLDISEL 223
GLD EL
Sbjct: 427 GLDKIEL 433
>SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1396
Score = 25.0 bits (52), Expect = 8.6
Identities = 10/30 (33%), Positives = 14/30 (46%)
Frame = +3
Query: 519 CGKRFSDDVSYEGHYIKHTENQPFKCSECP 608
CG+ FS ++ GH I + C CP
Sbjct: 1309 CGEYFSSFLNSSGHGIVYNPEAYSSCQYCP 1338
>SPAC1782.08c |rex3||exonuclease Rex3 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 540
Score = 25.0 bits (52), Expect = 8.6
Identities = 8/10 (80%), Positives = 9/10 (90%)
Frame = +3
Query: 510 CDRCGKRFSD 539
CDRCG RF+D
Sbjct: 299 CDRCGTRFAD 308
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,338,200
Number of Sequences: 5004
Number of extensions: 43781
Number of successful extensions: 133
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 267622334
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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