Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40380
         (613 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0360 + 2815067-2816033,2816120-2816198,2816275-2816342,281...    33   0.24 
10_08_0022 - 14225725-14226472,14227997-14228420,14228516-14228573     29   2.9  
07_03_1731 - 29102403-29102720,29103529-29103735,29103937-291052...    28   5.1  
05_01_0042 - 290077-290676,291093-291233,291675-291764,292364-29...    28   5.1  
01_07_0090 - 41003888-41004716,41005142-41005559,41007010-41007193     28   5.1  
01_06_1614 - 38648495-38649706                                         28   5.1  
02_01_0113 - 854108-854302,854399-854542,854658-854893,855036-85...    28   6.7  

>03_01_0360 +
           2815067-2816033,2816120-2816198,2816275-2816342,
           2817382-2817464,2821566-2823083
          Length = 904

 Score = 32.7 bits (71), Expect = 0.24
 Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
 Frame = +3

Query: 513 DRCGKRFSDDVSYEGHYIKHTENQPFKC--SECP 608
           + CGKRFS     + H   H + +PFKC    CP
Sbjct: 822 ESCGKRFSSHKYLKRHQCVHRDERPFKCPWDGCP 855


>10_08_0022 - 14225725-14226472,14227997-14228420,14228516-14228573
          Length = 409

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 11/35 (31%), Positives = 21/35 (60%)
 Frame = +3

Query: 492 GSKTI*CDRCGKRFSDDVSYEGHYIKHTENQPFKC 596
           G K   C+RCGKR++    ++ H +K+   + ++C
Sbjct: 120 GEKRWRCERCGKRYAVHSDWKAH-VKNCGTREYRC 153


>07_03_1731 -
           29102403-29102720,29103529-29103735,29103937-29105210,
           29105298-29105734,29106370-29106764,29106921-29107051,
           29109034-29109052
          Length = 926

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 20/58 (34%), Positives = 30/58 (51%)
 Frame = +2

Query: 110 ATVTYSPENVKVYSYGYAVGGKTIKRGDDVLGLDISELQILKIEDIMDLRIKRIMVLK 283
           ++V    EN+K  S    VG    +   D L LDI EL+ LK E I++  +K  ++ K
Sbjct: 720 SSVLTEKENIKGSSGETVVGSSPSREHTDELPLDIPELK-LKEEAILNRVLKEALLSK 776


>05_01_0042 -
           290077-290676,291093-291233,291675-291764,292364-292563,
           292685-292743,292827-292942
          Length = 401

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +3

Query: 519 CGKRFSDDVSYEGHYIKHTENQPFKC 596
           CGK+F D    + H++ HT  + F C
Sbjct: 123 CGKKFVDSSKLKRHHLIHTGQKDFIC 148


>01_07_0090 - 41003888-41004716,41005142-41005559,41007010-41007193
          Length = 476

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +3

Query: 492 GSKTI*CDRCGKRFSDDVSYEGHYIKHTENQPFKC 596
           G K   CDRCGKR++    ++ H  K    + +KC
Sbjct: 160 GEKKWKCDRCGKRYAVHSDWKAH-SKVCGTREYKC 193


>01_06_1614 - 38648495-38649706
          Length = 403

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = +3

Query: 510 CDRCGKRFSDDVSYEGHYIKH 572
           C  CGK FS  V+  GH  KH
Sbjct: 294 CKTCGKEFSTGVALGGHMRKH 314


>02_01_0113 -
           854108-854302,854399-854542,854658-854893,855036-855315,
           856891-857031,857259-857372
          Length = 369

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +1

Query: 418 HKCYECDKLFNKACYLTQHNKTFHSGAKPF 507
           H C EC   F K  +L QH ++ HS  + F
Sbjct: 60  HTCQECGASFQKPAHLKQHMQS-HSDERSF 88


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,408,464
Number of Sequences: 37544
Number of extensions: 257137
Number of successful extensions: 699
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 669
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 699
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1466594128
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)