Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40380
         (613 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY939827-1|AAY18208.1|  680|Anopheles gambiae CTCF-like protein ...    39   1e-04
AY353563-1|AAQ57599.1| 1132|Anopheles gambiae relish protein.          24   3.4  
AJ535205-1|CAD59405.1| 1201|Anopheles gambiae SMC3 protein protein.    24   4.4  
AF444783-1|AAL37904.1| 1356|Anopheles gambiae Trex protein.            24   4.4  

>AY939827-1|AAY18208.1|  680|Anopheles gambiae CTCF-like protein
           protein.
          Length = 680

 Score = 38.7 bits (86), Expect = 1e-04
 Identities = 17/44 (38%), Positives = 21/44 (47%)
 Frame = +3

Query: 477 QNLSFGSKTI*CDRCGKRFSDDVSYEGHYIKHTENQPFKCSECP 608
           QNL    K I C RC   F D  SY+ H   H   + ++C  CP
Sbjct: 318 QNLHTADKPIKCKRCDSTFPDRYSYKMHAKTHEGEKCYRCEYCP 361



 Score = 32.7 bits (71), Expect = 0.010
 Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 4/50 (8%)
 Frame = +1

Query: 418 HKCYECDKLFNKACYLTQHNKTFHSGAKPFNVTDAASAS----LMTSHMK 555
           HKC ECD    +   L +H +T H+G KPF       AS     +T HM+
Sbjct: 212 HKCTECDYASVELSKLKRHIRT-HTGEKPFQCPHCTYASPDKFKLTRHMR 260



 Score = 32.3 bits (70), Expect = 0.013
 Identities = 14/46 (30%), Positives = 23/46 (50%)
 Frame = +1

Query: 418 HKCYECDKLFNKACYLTQHNKTFHSGAKPFNVTDAASASLMTSHMK 555
           H+C  CD  F  +  L +H +  H+  +P   T+   AS+  S +K
Sbjct: 183 HRCKHCDNCFTTSGELIRHIRYRHTHERPHKCTECDYASVELSKLK 228



 Score = 31.9 bits (69), Expect = 0.017
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = +3

Query: 492 GSKTI*CDRCGKRFSDDVSYEGHYIKHTENQPFKCSEC 605
           G K   C+ C          E H + HT+ +P+KC +C
Sbjct: 351 GEKCYRCEYCPYASISMRHLESHLLLHTDQKPYKCDQC 388



 Score = 30.7 bits (66), Expect = 0.039
 Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
 Frame = +3

Query: 492 GSKTI*CDRCGKRFSDDVSYEGHYIKH-TENQP-FKCSECP 608
           G K   CD C  RF+   S + H + H   N+P F+C  CP
Sbjct: 264 GEKPYSCDVCFARFTQSNSLKAHKMIHQVGNKPVFQCKLCP 304



 Score = 29.1 bits (62), Expect = 0.12
 Identities = 14/43 (32%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
 Frame = +3

Query: 480 NLSFGSKTI*CDRCGKRFSDDVSYEGHY-IKHTENQPFKCSEC 605
           N   G+K   C  C   F+       H   +HT  +P KC+EC
Sbjct: 175 NTHTGTKPHRCKHCDNCFTTSGELIRHIRYRHTHERPHKCTEC 217



 Score = 27.9 bits (59), Expect = 0.27
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = +1

Query: 418 HKCYECDKLFNKACYLTQHNKTFHSGAKP 504
           HKC  C++ F     L  H  T H+G KP
Sbjct: 155 HKCVVCERGFKTLASLQNHVNT-HTGTKP 182



 Score = 24.2 bits (50), Expect = 3.4
 Identities = 16/47 (34%), Positives = 22/47 (46%)
 Frame = +3

Query: 471 TQQNLSFGSKTI*CDRCGKRFSDDVSYEGHYIKHTENQPFKCSECPK 611
           TQQ  S GS T  C+ C    +       H   H+E++P KC  C +
Sbjct: 119 TQQ--STGS-TYMCNYCNYTSNKLFLLSRHLKTHSEDRPHKCVVCER 162



 Score = 23.8 bits (49), Expect = 4.4
 Identities = 9/32 (28%), Positives = 13/32 (40%)
 Frame = +3

Query: 510 CDRCGKRFSDDVSYEGHYIKHTENQPFKCSEC 605
           C  C     +    + H   HT  +PF+C  C
Sbjct: 214 CTECDYASVELSKLKRHIRTHTGEKPFQCPHC 245


>AY353563-1|AAQ57599.1| 1132|Anopheles gambiae relish protein.
          Length = 1132

 Score = 24.2 bits (50), Expect = 3.4
 Identities = 11/39 (28%), Positives = 21/39 (53%)
 Frame = -1

Query: 601 SLHLKGWFSVCLM*CPSYETSSEKRLPHRSH*MVLLPNE 485
           ++ L+G+     + C  Y+   ++R PH SH +V+   E
Sbjct: 229 TVELRGYGGEAKVRCSLYQVDPQRRAPH-SHHLVIKSGE 266


>AJ535205-1|CAD59405.1| 1201|Anopheles gambiae SMC3 protein protein.
          Length = 1201

 Score = 23.8 bits (49), Expect = 4.4
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +1

Query: 412 PVHKCYECDKLFNKACYLTQHNKTFH 489
           PV + + CDK    A  +T  N+ FH
Sbjct: 536 PVIENFNCDKSIYTAVEVTAGNRLFH 561


>AF444783-1|AAL37904.1| 1356|Anopheles gambiae Trex protein.
          Length = 1356

 Score = 23.8 bits (49), Expect = 4.4
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +2

Query: 56  CGHNMEYEYSLSPGSVKEAT 115
           C   + ++ SLSPGS K+ T
Sbjct: 78  CNDGLFFQSSLSPGSFKQLT 97


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 596,950
Number of Sequences: 2352
Number of extensions: 10673
Number of successful extensions: 38
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37
length of database: 563,979
effective HSP length: 61
effective length of database: 420,507
effective search space used: 59711994
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)