Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40379
(718 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0696 + 6152849-6152857,6153676-6153751,6154644-6154804 56 2e-08
02_04_0077 - 19491844-19492154,19492456-19492531,19492841-19492852 54 1e-07
02_05_0764 + 31589040-31589309,31589322-31589529,31589892-31590193 38 0.011
04_03_0742 + 19200045-19200053,19200158-19200437,19201331-192015... 37 0.018
01_06_0769 - 31833788-31834182,31834277-31834352,31834458-31834463 36 0.032
03_03_0169 + 15057492-15057546,15057692-15057999 36 0.042
07_03_1643 + 28329090-28329125,28329260-28329335,28329413-28330305 35 0.056
02_03_0382 + 18352508-18352841,18353817-18354028,18354190-183542... 35 0.074
08_02_0605 + 19237482-19237644,19237957-19238246 34 0.13
03_01_0140 - 1105005-1105321,1105701-1105776,1106343-1106531 33 0.23
04_04_0914 - 29382245-29382489,29382632-29382755 33 0.30
05_01_0364 + 2855760-2855801,2855940-2856015,2856759-2857747 32 0.52
02_05_0326 + 27977888-27977890,27978494-27978569,27978649-27978971 31 1.2
12_01_0252 + 1868670-1869200,1870167-1871120 29 3.7
11_03_0183 - 11310671-11313625,11314243-11314287,11314550-11314717 29 3.7
11_01_0252 + 1934505-1935032,1936001-1936957 29 3.7
04_04_0028 - 22243272-22243577,22244564-22244713,22244919-222456... 29 4.9
02_01_0722 + 5405550-5405810,5406654-5407399,5407575-5408046,540... 29 4.9
04_04_1461 - 33767398-33767780,33768032-33768116 28 6.4
01_03_0008 + 11594061-11594078,11594201-11594285,11594506-11595149 28 6.4
09_02_0375 + 8119112-8119215,8119497-8119572,8119882-8119934,812... 28 8.5
>08_01_0696 + 6152849-6152857,6153676-6153751,6154644-6154804
Length = 81
Score = 56.4 bits (130), Expect = 2e-08
Identities = 26/57 (45%), Positives = 40/57 (70%)
Frame = +2
Query: 254 CSGAVERVLNRLKGQGVEDISISLPEQKVSVKSTLSADDLLEIIKKTGKKTTYVGAQ 424
C GAV+RVL ++ QGVE + + EQKV+VK ++ D +L+ + KTGKKT++ A+
Sbjct: 16 CVGAVKRVLGKM--QGVESFDVDIKEQKVTVKGNVTPDAVLQTVSKTGKKTSFWDAE 70
>02_04_0077 - 19491844-19492154,19492456-19492531,19492841-19492852
Length = 132
Score = 53.6 bits (123), Expect = 1e-07
Identities = 23/53 (43%), Positives = 37/53 (69%)
Frame = +2
Query: 254 CSGAVERVLNRLKGQGVEDISISLPEQKVSVKSTLSADDLLEIIKKTGKKTTY 412
C+GAV RVL ++ +GVE I + +QKV+VK + +D+ + + KTGKKT++
Sbjct: 17 CAGAVRRVLTKM--EGVETFDIDMEQQKVTVKGNVKPEDVFQTVSKTGKKTSF 67
>02_05_0764 + 31589040-31589309,31589322-31589529,31589892-31590193
Length = 259
Score = 37.5 bits (83), Expect = 0.011
Identities = 22/71 (30%), Positives = 37/71 (52%)
Frame = +2
Query: 191 RVQLQ*NDYDTHIQRRNDL*RCSGAVERVLNRLKGQGVEDISISLPEQKVSVKSTLSADD 370
R Q Q ++ R D RC V R L ++G V+ + +S +QKV+V ++ +
Sbjct: 126 RQQQQQLQITVELRVRMDCERCERQVRRALAGMRG--VQHVEVSRRQQKVTVTGSVDPHE 183
Query: 371 LLEIIKKTGKK 403
+L ++ TGKK
Sbjct: 184 VLRRVQSTGKK 194
>04_03_0742 +
19200045-19200053,19200158-19200437,19201331-19201545,
19201705-19201792,19202277-19202842
Length = 385
Score = 36.7 bits (81), Expect = 0.018
Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Frame = +2
Query: 254 CSGAVERVLNRLKG-QGVEDISISLPEQKVSVKSTLSADDLLEIIKKTGKKT 406
C G +V LKG GVED+ KV VK +A D ++++++ KKT
Sbjct: 81 CEGCARKVRKILKGFDGVEDVIADSKAHKVLVKGKKAAADPMKVVERVQKKT 132
>01_06_0769 - 31833788-31834182,31834277-31834352,31834458-31834463
Length = 158
Score = 35.9 bits (79), Expect = 0.032
Identities = 13/50 (26%), Positives = 30/50 (60%)
Frame = +2
Query: 254 CSGAVERVLNRLKGQGVEDISISLPEQKVSVKSTLSADDLLEIIKKTGKK 403
C + + + R+ +GV+D+ I + QKV+V + +L+ +++TG++
Sbjct: 15 CEKKIRKAIQRM--EGVDDVEIDMERQKVTVNGNVEQKKVLKAVRRTGRR 62
>03_03_0169 + 15057492-15057546,15057692-15057999
Length = 120
Score = 35.5 bits (78), Expect = 0.042
Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Frame = +2
Query: 254 CSGAVERVLNRLKG-QGVEDISISLPEQKVSVKSTLSADDLLEIIKKTGKKT 406
C G +V N L +GVE + I+ +QKV+V + A +L + TGKK+
Sbjct: 3 CDGCELKVKNALSTLKGVESVKINRKQQKVTVSGYVEASKVLRKAQSTGKKS 54
>07_03_1643 + 28329090-28329125,28329260-28329335,28329413-28330305
Length = 334
Score = 35.1 bits (77), Expect = 0.056
Identities = 18/52 (34%), Positives = 31/52 (59%)
Frame = +2
Query: 254 CSGAVERVLNRLKGQGVEDISISLPEQKVSVKSTLSADDLLEIIKKTGKKTT 409
C V++VL + +GV ++I + KV+V S++ AD L+ + K+GK T
Sbjct: 25 CKKKVKKVLQNI--EGVYKVTIDAAQHKVTVTSSVGADVLVRRLHKSGKHAT 74
>02_03_0382 +
18352508-18352841,18353817-18354028,18354190-18354277,
18355017-18355474
Length = 363
Score = 34.7 bits (76), Expect = 0.074
Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Frame = +2
Query: 254 CSGAVERVLNRLKG-QGVEDISISLPEQKVSVKSTLSADDLLEIIKKTGKKT 406
C G +V L+G GVED+ KV VK +A D ++++ + KKT
Sbjct: 96 CEGCARKVKKILRGFDGVEDVVADSKAHKVIVKGKKAAADPMKVVHRVQKKT 147
>08_02_0605 + 19237482-19237644,19237957-19238246
Length = 150
Score = 33.9 bits (74), Expect = 0.13
Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Frame = +2
Query: 254 CSGAVERVLNRLKG-QGVEDISISLPEQKVSVKSTLSADDLLEIIKKTGKKT 406
C G +V N L +GV+ + I+ +QKV+V+ + +L + TGK+T
Sbjct: 39 CDGCELKVRNTLANMKGVQSVEINRKQQKVTVQGMVDTQRVLRRAQSTGKRT 90
>03_01_0140 - 1105005-1105321,1105701-1105776,1106343-1106531
Length = 193
Score = 33.1 bits (72), Expect = 0.23
Identities = 17/55 (30%), Positives = 32/55 (58%), Gaps = 2/55 (3%)
Frame = +2
Query: 254 CSGAVERVLNR--LKGQGVEDISISLPEQKVSVKSTLSADDLLEIIKKTGKKTTY 412
CSG ERV+ +K +GV+ + + L +KV+V + +L+ +++ GKK +
Sbjct: 73 CSGC-ERVVKHALMKLRGVDSVEVELEMEKVTVTGYVERQRVLKEVRRAGKKAEF 126
>04_04_0914 - 29382245-29382489,29382632-29382755
Length = 122
Score = 32.7 bits (71), Expect = 0.30
Identities = 14/56 (25%), Positives = 30/56 (53%)
Frame = +2
Query: 254 CSGAVERVLNRLKGQGVEDISISLPEQKVSVKSTLSADDLLEIIKKTGKKTTYVGA 421
C +++ L+ L+G + + + +QKV+V + DD+L ++K + + GA
Sbjct: 29 CEKKIKKALSHLRG--IHSVQVDYQQQKVTVWGICNRDDVLAAVRKKRRAARFWGA 82
>05_01_0364 + 2855760-2855801,2855940-2856015,2856759-2857747
Length = 368
Score = 31.9 bits (69), Expect = 0.52
Identities = 18/49 (36%), Positives = 28/49 (57%)
Frame = +2
Query: 254 CSGAVERVLNRLKGQGVEDISISLPEQKVSVKSTLSADDLLEIIKKTGK 400
C V++VL+ ++G DI + QKV V +S D L++ + KTGK
Sbjct: 27 CKKKVKKVLHSIEGVYKTDIDVQ--HQKVVVIGNVSVDTLVKKLVKTGK 73
>02_05_0326 + 27977888-27977890,27978494-27978569,27978649-27978971
Length = 133
Score = 30.7 bits (66), Expect = 1.2
Identities = 14/53 (26%), Positives = 28/53 (52%)
Frame = +2
Query: 254 CSGAVERVLNRLKGQGVEDISISLPEQKVSVKSTLSADDLLEIIKKTGKKTTY 412
C V + ++RL +GV + I + QKV+V + ++L ++TG+ +
Sbjct: 14 CEKRVRKAMSRL--EGVSTVEIDMDTQKVTVTGYVDRREVLRAARRTGRAAEF 64
>12_01_0252 + 1868670-1869200,1870167-1871120
Length = 494
Score = 29.1 bits (62), Expect = 3.7
Identities = 15/53 (28%), Positives = 30/53 (56%), Gaps = 3/53 (5%)
Frame = +2
Query: 251 RCSGAVERVLNRL---KGQGVEDISISLPEQKVSVKSTLSADDLLEIIKKTGK 400
RC AV+ L+ L + GVE +++ + +Q S+ S DD+++++ + K
Sbjct: 149 RCGAAVDLALDTLAAARSFGVEQLALLVQKQLESMVKEASVDDVMKVLMASRK 201
>11_03_0183 - 11310671-11313625,11314243-11314287,11314550-11314717
Length = 1055
Score = 29.1 bits (62), Expect = 3.7
Identities = 12/46 (26%), Positives = 24/46 (52%)
Frame = +2
Query: 254 CSGAVERVLNRLKGQGVEDISISLPEQKVSVKSTLSADDLLEIIKK 391
CS + + +G+ED+S+++P K DD++++ KK
Sbjct: 284 CSRGSRHLPEFVTFEGIEDVSVAIPHTKRKRMDKSGGDDVMDMEKK 329
>11_01_0252 + 1934505-1935032,1936001-1936957
Length = 494
Score = 29.1 bits (62), Expect = 3.7
Identities = 15/53 (28%), Positives = 30/53 (56%), Gaps = 3/53 (5%)
Frame = +2
Query: 251 RCSGAVERVLNRL---KGQGVEDISISLPEQKVSVKSTLSADDLLEIIKKTGK 400
RC AV+ L+ L + GVE +++ + +Q S+ S DD+++++ + K
Sbjct: 148 RCGAAVDLALDTLAAARSFGVEQLALLVQKQLESMVKEASVDDVMKVLMASRK 200
>04_04_0028 -
22243272-22243577,22244564-22244713,22244919-22245656,
22247233-22247331,22247541-22247933,22248806-22248961
Length = 613
Score = 28.7 bits (61), Expect = 4.9
Identities = 11/44 (25%), Positives = 25/44 (56%)
Frame = -1
Query: 151 HSISD*TF*DLIIYQILIKLIEDNVLAVYFCSLSRTSIAIHLAQ 20
H + + T D+I +++E ++ Y CS++R +I +H+ +
Sbjct: 559 HVVENATALDVITVDTTERMLESDIKNDYLCSIARQTIELHIRE 602
>02_01_0722 +
5405550-5405810,5406654-5407399,5407575-5408046,
5408129-5408296,5408301-5408418,5408845-5409056,
5409165-5409287,5409395-5409880,5409976-5410401
Length = 1003
Score = 28.7 bits (61), Expect = 4.9
Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = +2
Query: 254 CSGAVERVLNRLKGQGVEDISISLPEQKVSVKSTLSADDL-LEIIKKTG 397
CS +VER L + G + ++L E KV +++ DL +E I+ G
Sbjct: 125 CSESVERALQMVPGVKKAAVGLALEEAKVHFDPNITSRDLIIEAIEDAG 173
>04_04_1461 - 33767398-33767780,33768032-33768116
Length = 155
Score = 28.3 bits (60), Expect = 6.4
Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Frame = +2
Query: 254 CSGAVERVLNRLKG-QGVEDISISLPEQKVSVKSTLSADDLLEIIKKTGKKTTYV 415
C ++L + G QGV+ I I + ++V + D++E +K GK+ V
Sbjct: 13 CDKCKRKILQTVSGLQGVDKIDIDSEKGTMTVTARADPVDVIERTRKAGKRAEVV 67
>01_03_0008 + 11594061-11594078,11594201-11594285,11594506-11595149
Length = 248
Score = 28.3 bits (60), Expect = 6.4
Identities = 13/53 (24%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Frame = +2
Query: 254 CSGAVERVLNRLKG-QGVEDISISLPEQKVSVKSTLSADDLLEIIKKTGKKTT 409
C+G ++ L+ GV ++ + QKV+V + +++ I+KT + T
Sbjct: 19 CNGCEHKIRKTLRAIDGVSEVYVDAASQKVTVVGIADPERIVKAIRKTKRVPT 71
>09_02_0375 +
8119112-8119215,8119497-8119572,8119882-8119934,
8121443-8121951,8122127-8122287,8122416-8122493,
8122647-8122728,8122826-8123052
Length = 429
Score = 27.9 bits (59), Expect = 8.5
Identities = 11/35 (31%), Positives = 17/35 (48%)
Frame = -2
Query: 336 FCSGKLIDISSTPCPFSLLRTRSTAPEHLHRSFLR 232
F + KL+D+ + P LL ST H H ++
Sbjct: 104 FTNNKLVDVDNNPLQVHLLHMSSTTTSHHHLPMIK 138
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,091,501
Number of Sequences: 37544
Number of extensions: 324028
Number of successful extensions: 669
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 659
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 667
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1862792824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -