Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40379
         (718 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    24   1.7  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    23   2.2  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    23   2.2  
AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    23   3.8  
AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    23   3.8  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    23   3.8  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              22   6.7  

>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 9/33 (27%), Positives = 16/33 (48%)
 Frame = +1

Query: 394 WQENHICWCSVELAGWFLIPQNLWPFWMLKIIM 492
           W+++H+ W S E      I    +  W+  I+M
Sbjct: 90  WEQSHLTWKSSEFDSINSIRVKSYEIWVPDIVM 122


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = +1

Query: 193 CTVTVK*LRHTYST*K*PVKVFWRRRT 273
           C+  +  L H     K PVK FW RRT
Sbjct: 168 CSTPIGNLSHALL--KDPVKEFWERRT 192


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = +1

Query: 193 CTVTVK*LRHTYST*K*PVKVFWRRRT 273
           C+  +  L H     K PVK FW RRT
Sbjct: 221 CSTPIGNLSHALL--KDPVKEFWERRT 245


>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +2

Query: 596 LDGESHQMNRLIYLISP 646
           LDGE  + +RL+Y + P
Sbjct: 373 LDGEKQKTDRLLYSVLP 389


>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = +1

Query: 244 PVKVFWRRRTSSQQTEGARCRGYI 315
           PVK FW RR + Q +EG    G I
Sbjct: 150 PVKEFWERR-ALQISEGVEYVGNI 172


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +2

Query: 596 LDGESHQMNRLIYLISP 646
           LDGE  + +RL+Y + P
Sbjct: 373 LDGEKQKTDRLLYSVLP 389


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 7/26 (26%), Positives = 16/26 (61%)
 Frame = +3

Query: 534 HYI*SKCIILSHILAIHVYCSLMVSP 611
           H + ++ ++ +H+L IH    + V+P
Sbjct: 383 HAVRNQDVVQTHVLTIHTIPEVKVTP 408


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 197,140
Number of Sequences: 438
Number of extensions: 4502
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22170330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)