Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40378
         (625 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0418 + 28807763-28807777,28809216-28809242,28809588-288096...    29   4.0  
02_04_0580 + 24065830-24065967,24066163-24067425                       29   4.0  
02_03_0303 - 17506392-17506399,17507055-17507286,17507390-175074...    28   5.2  
12_02_0626 - 21344530-21344986,21346132-21346469,21347300-213473...    28   6.9  
07_03_0512 - 18954515-18955972                                         28   6.9  
01_06_1842 - 40278875-40280131                                         28   6.9  

>02_05_0418 +
           28807763-28807777,28809216-28809242,28809588-28809621,
           28809909-28810154,28810518-28810948,28812759-28813418
          Length = 470

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +2

Query: 428 PWPKPWTRRSSLPRGFSSSTGKSLKTAPPPR 520
           P+PKP  RR   PRG +  +  +    PPP+
Sbjct: 353 PFPKPVPRRGGAPRGKAWESFAAAGKEPPPK 383


>02_04_0580 + 24065830-24065967,24066163-24067425
          Length = 466

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 19/74 (25%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
 Frame = +1

Query: 316 LIKHVTKRGGKMDFSSHTTLKGDKGSNYTVEVGHEIGALAKALDTQKQLAERIFFIHREV 495
           L+K V +  G ++FS   T+ G +    T   G ++GA + +   +++L      I++  
Sbjct: 354 LVKRVLRCFGPLEFSVAVTIFGGRNHAGTWAKGLDVGAYSCSNMVEQELPSGGLLIYQSF 413

Query: 496 TKNSASST-MPRSL 534
           T  +  +T  PRS+
Sbjct: 414 TATAEIATGSPRSV 427


>02_03_0303 -
           17506392-17506399,17507055-17507286,17507390-17507461,
           17507561-17508586,17509194-17509448,17510483-17510962
          Length = 690

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = +2

Query: 470 GFSSSTGKSLKTAPPPRCRDHSIHRGGIRESASRYDS*PRG 592
           G   S G+S  +APPP  R   + +GG+ E  ++    P G
Sbjct: 95  GMGGSRGES-SSAPPPPPRSRVLRQGGLEEEYAKNSPSPLG 134


>12_02_0626 -
           21344530-21344986,21346132-21346469,21347300-21347338,
           21347572-21347629,21349854-21350136,21350404-21350766,
           21350768-21350840
          Length = 536

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 13/51 (25%), Positives = 26/51 (50%)
 Frame = +2

Query: 26  RCLSGSGCAGRGRLMLSERRPRMQTDFKSAALQRVLRPIQGQPRCSERTEG 178
           + ++G G +GRG ++  +  PR     + +A +R L   +G  +C +   G
Sbjct: 87  KAVTGGGRSGRGLVVCCQMAPRRGGGERRSAQRRRLERRKGGDQCDDELSG 137


>07_03_0512 - 18954515-18955972
          Length = 485

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
 Frame = -2

Query: 225 PTGDNGRNVSNTVR---LMPSVRSLQRGCP*IGRNTRCSAADLKSVC 94
           P G +G+   + V    L  +VRSL      +GR  R  AA++K+VC
Sbjct: 408 PLGVDGKRRDSFVEAAELERAVRSLMDDASEVGRKVREKAAEMKAVC 454


>01_06_1842 - 40278875-40280131
          Length = 418

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +2

Query: 428 PWPKPWTRRSSLPRGFSSSTGKSLKTAPPP 517
           P P P  + SS P   S+S G++   APPP
Sbjct: 233 PGPAPARKVSSAPCSRSNSRGETSAAAPPP 262


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,846,206
Number of Sequences: 37544
Number of extensions: 352150
Number of successful extensions: 1059
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1027
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1058
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1513903616
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)