Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40377
(632 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0935 + 24560432-24561852,24562543-24562628,24563265-24563332 34 0.11
03_02_0884 + 12160453-12160518,12160598-12160696,12163223-121633... 29 2.3
08_02_1240 + 25504789-25504794,25505421-25505555,25505854-255059... 29 3.1
08_02_0747 - 20728073-20728081,20728167-20728353,20728810-207289... 29 3.1
06_01_0047 - 429838-429960,430413-430508,430589-430596,431088-43... 29 3.1
09_06_0153 - 21243108-21245660 28 5.4
11_06_0151 - 20643032-20643085,20643202-20643307,20643415-206434... 27 9.4
06_03_0037 + 15773444-15773647,15773862-15774367,15775011-157752... 27 9.4
>12_02_0935 + 24560432-24561852,24562543-24562628,24563265-24563332
Length = 524
Score = 33.9 bits (74), Expect = 0.11
Identities = 14/34 (41%), Positives = 24/34 (70%)
Frame = +1
Query: 289 MVQDLDTSFLIWIQQLNIYVKLLISQPTLHTEVE 390
+++ +D FL WI +L++ K+L S PTL+ +VE
Sbjct: 392 LMEKIDDEFLFWIVELDMTNKVLRSLPTLYIQVE 425
>03_02_0884 +
12160453-12160518,12160598-12160696,12163223-12163357,
12163841-12163891,12164070-12164693,12164779-12164952,
12165047-12165272,12165368-12165459,12165551-12165649,
12165743-12165791,12165878-12165931,12166235-12166290,
12166367-12166438,12166520-12166615,12167069-12167418,
12167508-12167679,12167777-12167875,12167959-12168090,
12168185-12168288,12168369-12168401,12168744-12168930,
12169016-12169024
Length = 992
Score = 29.5 bits (63), Expect = 2.3
Identities = 16/50 (32%), Positives = 22/50 (44%)
Frame = -2
Query: 460 SPHSIAVFSTICAFSEFLLKKQMIPPLYAMWAVKLRALRKCSAVVSKSKM 311
SPH V C S L K +P +A+W K + CS +V K+
Sbjct: 146 SPHHKTVIENYCFQSMLLFDKCFVPNSFALWITK-QVDVNCSDIVLGQKL 194
>08_02_1240 +
25504789-25504794,25505421-25505555,25505854-25505964,
25506091-25506183,25506264-25506884,25506970-25507143,
25507239-25507464,25507560-25507651,25507744-25507842,
25507936-25507984,25508071-25508124,25508312-25508484,
25508561-25508632,25508713-25508808,25509032-25509048,
25509704-25509875,25509973-25510071,25510381-25510484,
25510940-25511126,25511212-25511220
Length = 862
Score = 29.1 bits (62), Expect = 3.1
Identities = 16/50 (32%), Positives = 22/50 (44%)
Frame = -2
Query: 460 SPHSIAVFSTICAFSEFLLKKQMIPPLYAMWAVKLRALRKCSAVVSKSKM 311
SPH V C S L K +P +A+W K + CS +V K+
Sbjct: 143 SPHHKTVIENSCFQSMLLFDKCFVPNSFALWIAK-QVDVNCSDIVLGQKL 191
>08_02_0747 -
20728073-20728081,20728167-20728353,20728810-20728913,
20729008-20729139,20729583-20729810,20730263-20730358,
20730440-20730511,20730588-20730760,20730947-20731000,
20731086-20731134,20731228-20731326,20731420-20731511,
20731607-20731832,20731927-20732100,20732186-20732809,
20732890-20733033,20733108-20733218,20733516-20733650,
20733963-20733989
Length = 911
Score = 29.1 bits (62), Expect = 3.1
Identities = 16/50 (32%), Positives = 22/50 (44%)
Frame = -2
Query: 460 SPHSIAVFSTICAFSEFLLKKQMIPPLYAMWAVKLRALRKCSAVVSKSKM 311
SPH V C S L K +P +A+W K + CS +V K+
Sbjct: 168 SPHHKTVIENSCFQSMLLFDKCFVPNSFALWIAK-QVDVNCSDIVLGQKL 216
>06_01_0047 -
429838-429960,430413-430508,430589-430596,431088-431141,
431226-431274,431368-431466,431560-431639,431926-431989,
432082-432255,432342-432965,433046-433189,433262-433372,
433442-433498,433664-433798
Length = 605
Score = 29.1 bits (62), Expect = 3.1
Identities = 16/50 (32%), Positives = 22/50 (44%)
Frame = -2
Query: 460 SPHSIAVFSTICAFSEFLLKKQMIPPLYAMWAVKLRALRKCSAVVSKSKM 311
SPH V C S L K +P +A+W K + CS +V K+
Sbjct: 178 SPHHKTVIENSCFRSMLLFDKCFVPNSFALWIAK-QVDVNCSDIVLGQKL 226
>09_06_0153 - 21243108-21245660
Length = 850
Score = 28.3 bits (60), Expect = 5.4
Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Frame = +3
Query: 378 YRGGIICFFN-RNSLNAHIVEKTAMECGEYAHTRFWRGG 491
Y G ++C + R LN ++E G +A FWRGG
Sbjct: 590 YDGKMVCRRDDRCELNRKVLELAPCTVGVFADRPFWRGG 628
>11_06_0151 -
20643032-20643085,20643202-20643307,20643415-20643495,
20643588-20643715,20643829-20643903,20644853-20645374,
20646622-20646687,20647990-20648076,20648173-20648247,
20648705-20648821,20648932-20649015,20649152-20649217,
20649352-20649417,20650079-20650150,20650231-20650332,
20650428-20650605,20650700-20650755,20653159-20653269,
20653354-20653422,20653558-20653741,20653826-20653914,
20654070-20654147,20654509-20654631,20654755-20654874,
20654975-20655055,20655285-20655431,20655533-20655611,
20657114-20657223,20659138-20659236,20659467-20659582,
20659673-20659781,20659839-20660069,20660152-20660417,
20661349-20661506,20661601-20661751,20661897-20661966,
20662203-20662232
Length = 1451
Score = 27.5 bits (58), Expect = 9.4
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = +3
Query: 300 LGHLIFDLDTTAEHLRKALNFTAHIAYRGGIICF 401
LG + F+ + EH+ K F A G IICF
Sbjct: 746 LGEIKFEPNVMCEHIDKKATFRASQLEDGDIICF 779
>06_03_0037 +
15773444-15773647,15773862-15774367,15775011-15775246,
15775483-15775685,15775989-15776279,15776997-15777084,
15777539-15777861
Length = 616
Score = 27.5 bits (58), Expect = 9.4
Identities = 15/60 (25%), Positives = 30/60 (50%)
Frame = +1
Query: 172 DYPDYFGVHNLFTVKDLFDARVHYGHKMGPLMIT*DHTYMVQDLDTSFLIWIQQLNIYVK 351
++ D FG+H+ ++DL+D R H+ P D+ V ++ T++ Q +Y +
Sbjct: 281 EFIDKFGLHDSTVLRDLYDIR----HRWVPAFFKEDYCGSVPNVKTAWPFAEQLSRVYTR 336
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,227,911
Number of Sequences: 37544
Number of extensions: 362819
Number of successful extensions: 757
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 743
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 756
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1549385732
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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