Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40377
(632 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC013108-1|AAH13108.1| 296|Homo sapiens mitochondrial ribosomal... 106 7e-23
BC008017-1|AAH08017.1| 296|Homo sapiens mitochondrial ribosomal... 106 7e-23
AL161452-6|CAI14047.1| 296|Homo sapiens mitochondrial ribosomal... 106 7e-23
AL161452-5|CAI14046.1| 270|Homo sapiens mitochondrial ribosomal... 106 7e-23
AF151849-1|AAD34086.1| 296|Homo sapiens CGI-91 protein protein. 106 7e-23
AB055388-1|BAB62529.1| 296|Homo sapiens mitochondrial ribosomal... 106 7e-23
AB051627-1|BAB54954.1| 22|Homo sapiens mitochondrial ribosomal... 30 7.8
>BC013108-1|AAH13108.1| 296|Homo sapiens mitochondrial ribosomal
protein S2 protein.
Length = 296
Score = 106 bits (254), Expect = 7e-23
Identities = 47/78 (60%), Positives = 60/78 (76%)
Frame = +3
Query: 273 MRSYIYGSRLGHLIFDLDTTAEHLRKALNFTAHIAYRGGIICFFNRNSLNAHIVEKTAME 452
M YI+GSRL H I DL+ TA HL+ ALNFTAH+AYR GII F +RN ++++E A +
Sbjct: 102 MEPYIFGSRLDHDIIDLEQTATHLQLALNFTAHMAYRKGIILFISRNRQFSYLIENMARD 161
Query: 453 CGEYAHTRFWRGGIFTNA 506
CGEYAHTR++RGG+ TNA
Sbjct: 162 CGEYAHTRYFRGGMLTNA 179
Score = 46.8 bits (106), Expect = 6e-05
Identities = 19/31 (61%), Positives = 23/31 (74%)
Frame = +1
Query: 166 PLDYPDYFGVHNLFTVKDLFDARVHYGHKMG 258
PL + D+F V LF+V+ LFDARVH GHK G
Sbjct: 66 PLKHSDFFNVKELFSVRSLFDARVHLGHKAG 96
Score = 40.7 bits (91), Expect = 0.004
Identities = 20/36 (55%), Positives = 21/36 (58%)
Frame = +2
Query: 515 FGAITRLPDLCIFLNTQNNILNQHTAVRVVPKC*YP 622
FG RLPDL IFL+T NNI H AVR K P
Sbjct: 183 FGPTVRLPDLIIFLHTLNNIFEPHVAVRDAAKMNIP 218
>BC008017-1|AAH08017.1| 296|Homo sapiens mitochondrial ribosomal
protein S2 protein.
Length = 296
Score = 106 bits (254), Expect = 7e-23
Identities = 47/78 (60%), Positives = 60/78 (76%)
Frame = +3
Query: 273 MRSYIYGSRLGHLIFDLDTTAEHLRKALNFTAHIAYRGGIICFFNRNSLNAHIVEKTAME 452
M YI+GSRL H I DL+ TA HL+ ALNFTAH+AYR GII F +RN ++++E A +
Sbjct: 102 MEPYIFGSRLDHDIIDLEQTATHLQLALNFTAHMAYRKGIILFISRNRQFSYLIENMARD 161
Query: 453 CGEYAHTRFWRGGIFTNA 506
CGEYAHTR++RGG+ TNA
Sbjct: 162 CGEYAHTRYFRGGMLTNA 179
Score = 46.8 bits (106), Expect = 6e-05
Identities = 19/31 (61%), Positives = 23/31 (74%)
Frame = +1
Query: 166 PLDYPDYFGVHNLFTVKDLFDARVHYGHKMG 258
PL + D+F V LF+V+ LFDARVH GHK G
Sbjct: 66 PLKHSDFFNVKELFSVRSLFDARVHLGHKAG 96
Score = 40.7 bits (91), Expect = 0.004
Identities = 20/36 (55%), Positives = 21/36 (58%)
Frame = +2
Query: 515 FGAITRLPDLCIFLNTQNNILNQHTAVRVVPKC*YP 622
FG RLPDL IFL+T NNI H AVR K P
Sbjct: 183 FGPTVRLPDLIIFLHTLNNIFEPHVAVRDAAKMNIP 218
>AL161452-6|CAI14047.1| 296|Homo sapiens mitochondrial ribosomal
protein S2 protein.
Length = 296
Score = 106 bits (254), Expect = 7e-23
Identities = 47/78 (60%), Positives = 60/78 (76%)
Frame = +3
Query: 273 MRSYIYGSRLGHLIFDLDTTAEHLRKALNFTAHIAYRGGIICFFNRNSLNAHIVEKTAME 452
M YI+GSRL H I DL+ TA HL+ ALNFTAH+AYR GII F +RN ++++E A +
Sbjct: 102 MEPYIFGSRLDHDIIDLEQTATHLQLALNFTAHMAYRKGIILFISRNRQFSYLIENMARD 161
Query: 453 CGEYAHTRFWRGGIFTNA 506
CGEYAHTR++RGG+ TNA
Sbjct: 162 CGEYAHTRYFRGGMLTNA 179
Score = 46.8 bits (106), Expect = 6e-05
Identities = 19/31 (61%), Positives = 23/31 (74%)
Frame = +1
Query: 166 PLDYPDYFGVHNLFTVKDLFDARVHYGHKMG 258
PL + D+F V LF+V+ LFDARVH GHK G
Sbjct: 66 PLKHSDFFNVKELFSVRSLFDARVHLGHKAG 96
Score = 40.7 bits (91), Expect = 0.004
Identities = 20/36 (55%), Positives = 21/36 (58%)
Frame = +2
Query: 515 FGAITRLPDLCIFLNTQNNILNQHTAVRVVPKC*YP 622
FG RLPDL IFL+T NNI H AVR K P
Sbjct: 183 FGPTVRLPDLIIFLHTLNNIFEPHVAVRDAAKMNIP 218
>AL161452-5|CAI14046.1| 270|Homo sapiens mitochondrial ribosomal
protein S2 protein.
Length = 270
Score = 106 bits (254), Expect = 7e-23
Identities = 47/78 (60%), Positives = 60/78 (76%)
Frame = +3
Query: 273 MRSYIYGSRLGHLIFDLDTTAEHLRKALNFTAHIAYRGGIICFFNRNSLNAHIVEKTAME 452
M YI+GSRL H I DL+ TA HL+ ALNFTAH+AYR GII F +RN ++++E A +
Sbjct: 116 MEPYIFGSRLDHDIIDLEQTATHLQLALNFTAHMAYRKGIILFISRNRQFSYLIENMARD 175
Query: 453 CGEYAHTRFWRGGIFTNA 506
CGEYAHTR++RGG+ TNA
Sbjct: 176 CGEYAHTRYFRGGMLTNA 193
Score = 46.8 bits (106), Expect = 6e-05
Identities = 19/31 (61%), Positives = 23/31 (74%)
Frame = +1
Query: 166 PLDYPDYFGVHNLFTVKDLFDARVHYGHKMG 258
PL + D+F V LF+V+ LFDARVH GHK G
Sbjct: 80 PLKHSDFFNVKELFSVRSLFDARVHLGHKAG 110
Score = 40.7 bits (91), Expect = 0.004
Identities = 20/36 (55%), Positives = 21/36 (58%)
Frame = +2
Query: 515 FGAITRLPDLCIFLNTQNNILNQHTAVRVVPKC*YP 622
FG RLPDL IFL+T NNI H AVR K P
Sbjct: 197 FGPTVRLPDLIIFLHTLNNIFEPHVAVRDAAKMNIP 232
>AF151849-1|AAD34086.1| 296|Homo sapiens CGI-91 protein protein.
Length = 296
Score = 106 bits (254), Expect = 7e-23
Identities = 47/78 (60%), Positives = 60/78 (76%)
Frame = +3
Query: 273 MRSYIYGSRLGHLIFDLDTTAEHLRKALNFTAHIAYRGGIICFFNRNSLNAHIVEKTAME 452
M YI+GSRL H I DL+ TA HL+ ALNFTAH+AYR GII F +RN ++++E A +
Sbjct: 102 MEPYIFGSRLDHDIIDLEQTATHLQLALNFTAHMAYRKGIILFISRNRQFSYLIENMARD 161
Query: 453 CGEYAHTRFWRGGIFTNA 506
CGEYAHTR++RGG+ TNA
Sbjct: 162 CGEYAHTRYFRGGMLTNA 179
Score = 46.8 bits (106), Expect = 6e-05
Identities = 19/31 (61%), Positives = 23/31 (74%)
Frame = +1
Query: 166 PLDYPDYFGVHNLFTVKDLFDARVHYGHKMG 258
PL + D+F V LF+V+ LFDARVH GHK G
Sbjct: 66 PLKHSDFFNVKELFSVRSLFDARVHLGHKAG 96
Score = 40.7 bits (91), Expect = 0.004
Identities = 20/36 (55%), Positives = 21/36 (58%)
Frame = +2
Query: 515 FGAITRLPDLCIFLNTQNNILNQHTAVRVVPKC*YP 622
FG RLPDL IFL+T NNI H AVR K P
Sbjct: 183 FGPTVRLPDLIIFLHTLNNIFEPHVAVRDAAKMNIP 218
>AB055388-1|BAB62529.1| 296|Homo sapiens mitochondrial ribosomal
protein S2 protein.
Length = 296
Score = 106 bits (254), Expect = 7e-23
Identities = 47/78 (60%), Positives = 60/78 (76%)
Frame = +3
Query: 273 MRSYIYGSRLGHLIFDLDTTAEHLRKALNFTAHIAYRGGIICFFNRNSLNAHIVEKTAME 452
M YI+GSRL H I DL+ TA HL+ ALNFTAH+AYR GII F +RN ++++E A +
Sbjct: 102 MEPYIFGSRLDHDIIDLEQTATHLQLALNFTAHMAYRKGIILFISRNRQFSYLIENMARD 161
Query: 453 CGEYAHTRFWRGGIFTNA 506
CGEYAHTR++RGG+ TNA
Sbjct: 162 CGEYAHTRYFRGGMLTNA 179
Score = 46.8 bits (106), Expect = 6e-05
Identities = 19/31 (61%), Positives = 23/31 (74%)
Frame = +1
Query: 166 PLDYPDYFGVHNLFTVKDLFDARVHYGHKMG 258
PL + D+F V LF+V+ LFDARVH GHK G
Sbjct: 66 PLKHSDFFNVKELFSVRSLFDARVHLGHKAG 96
Score = 40.7 bits (91), Expect = 0.004
Identities = 20/36 (55%), Positives = 21/36 (58%)
Frame = +2
Query: 515 FGAITRLPDLCIFLNTQNNILNQHTAVRVVPKC*YP 622
FG RLPDL IFL+T NNI H AVR K P
Sbjct: 183 FGPTVRLPDLIIFLHTLNNIFEPHVAVRDAAKMNIP 218
>AB051627-1|BAB54954.1| 22|Homo sapiens mitochondrial ribosomal
protein S2 protein.
Length = 22
Score = 29.9 bits (64), Expect = 7.8
Identities = 13/21 (61%), Positives = 15/21 (71%)
Frame = +3
Query: 273 MRSYIYGSRLGHLIFDLDTTA 335
M YI+GSRL H I DL+ TA
Sbjct: 1 MEPYIFGSRLDHDIIDLEQTA 21
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 99,529,267
Number of Sequences: 237096
Number of extensions: 2207963
Number of successful extensions: 3318
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3245
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3316
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6916500330
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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