Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40376
         (656 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synth...    31   0.11 
SPBC1289.13c |||alpha-1,2-galactosyltransferase|Schizosaccharomy...    28   1.4  
SPCC584.01c |||sulfite reductase NADPH flavoprotein subunit |Sch...    28   1.4  
SPAC23H4.15 |||ribosome biogenesis protein Tsr1 |Schizosaccharom...    28   1.4  
SPBC2D10.05 |exg3||glucan 1,3-beta-glucosidase Exg3|Schizosaccha...    27   2.4  
SPAC24B11.07c |||ketopantoate reductase |Schizosaccharomyces pom...    27   3.1  
SPCC306.03c |cnd2||condensin subunit Cnd2|Schizosaccharomyces po...    26   4.2  
SPAC29A4.11 |rga3||GTPase activating protein Rga3|Schizosaccharo...    25   7.3  
SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos...    25   9.6  

>SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synthase
           Ade3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1323

 Score = 31.5 bits (68), Expect = 0.11
 Identities = 10/20 (50%), Positives = 16/20 (80%)
 Frame = +3

Query: 240 LRTHSIMNLNLPGYKKPWSI 299
           L  +S+ +LN+PGYK+PW +
Sbjct: 337 LAGYSVSDLNIPGYKQPWEL 356


>SPBC1289.13c |||alpha-1,2-galactosyltransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 375

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 16/39 (41%), Positives = 20/39 (51%)
 Frame = +3

Query: 39  KSYGTDICAKIYQMGHNWFERSEKNGRKYYLSSRLFTVP 155
           + YG  I  K    GH+WF+ SEK     Y+  RLF  P
Sbjct: 344 EKYGKIITEK---QGHDWFDPSEKE----YIEQRLFPQP 375


>SPCC584.01c |||sulfite reductase NADPH flavoprotein subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1006

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +1

Query: 145 LLYQIGETQGQYGVGFIIKQHLKQYVEEF 231
           L Y IGE  G YGV    K H+  ++EE+
Sbjct: 656 LTYDIGEALGVYGVN--NKTHVHDFIEEY 682


>SPAC23H4.15 |||ribosome biogenesis protein Tsr1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 783

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 10/35 (28%), Positives = 20/35 (57%)
 Frame = +3

Query: 279 YKKPWSIVQIYSPTEQSNLETINNFYHILNEAIQE 383
           Y KPW+++ +YS  +  N  T++ F  + +   +E
Sbjct: 563 YNKPWNLLVLYSLLQYENKLTVSQFTAMQHSEYEE 597


>SPBC2D10.05 |exg3||glucan 1,3-beta-glucosidase
           Exg3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 464

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 18/66 (27%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
 Frame = +3

Query: 240 LRTHSIMNLNLP-GYKKPWSIVQIYSPTEQSNLETINNFYHILNEAIQEHTHKNLIVMGD 416
           ++ H + ++ +P GY    +   +     +   E   N  HIL E IQE    ++ V+ D
Sbjct: 77  MKQHLVNSVRIPLGYWSLGNDELVKGTPFEPYAEVYRNSLHILCEKIQEAGSLSIGVLLD 136

Query: 417 FNGQIG 434
           F+G  G
Sbjct: 137 FHGVYG 142


>SPAC24B11.07c |||ketopantoate reductase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 561

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 5/56 (8%)
 Frame = +3

Query: 357 HILNEAIQEHTHKNLIVMGDFNG-----QIGARRPGENAILGQYSYSNKTRSRNGE 509
           ++L+   +EHTHKN+       G        ++  G   +    S SN   SRNGE
Sbjct: 452 NVLSPEAKEHTHKNISPESSRFGTPSDPNSSSQSLGNEVLSRPNSNSNSAESRNGE 507


>SPCC306.03c |cnd2||condensin subunit Cnd2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 742

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = +1

Query: 502 MGKNYKLRAGKQINNLKYYFQKNRKSMWTG 591
           M +NY + +    N +  YF K+ K  W G
Sbjct: 403 MNENYSIISTAAANGVYEYFDKSMKKNWAG 432


>SPAC29A4.11 |rga3||GTPase activating protein
           Rga3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 969

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 6/47 (12%)
 Frame = +3

Query: 333 LETINNFYHILNEAIQEHTHKNL--IVMGDFNG----QIGARRPGEN 455
           L+  NN   ILNE+++   H N   + + D N     QI  R P EN
Sbjct: 557 LDDYNNVQKILNESLEASVHLNTKNLELADLNNNLVKQIQHRVPPEN 603


>SPAC20G8.05c |cdc15||cell division control protein
           Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 927

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 12/47 (25%), Positives = 21/47 (44%)
 Frame = +1

Query: 484 TRPEAEMGKNYKLRAGKQINNLKYYFQKNRKSMWTGSRRMVNQK*ID 624
           +RP +EMG  Y   +G+ +  +        +S    +R  V  K +D
Sbjct: 809 SRPSSEMGHRYGSMSGRSMRQVSQRSTSRARSPEPTNRNSVQSKNVD 855


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,951,045
Number of Sequences: 5004
Number of extensions: 65810
Number of successful extensions: 144
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)