Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40376
         (656 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Y18896-1|CAB75545.1|  121|Homo sapiens Homer-3D protein protein.       30   8.3  
Y18895-1|CAB75544.1|  145|Homo sapiens Homer-3C protein protein.       30   8.3  
Y17573-1|CAB75536.1|  361|Homo sapiens HOMER-3A (flip) protein p...    30   8.3  
BC012113-1|AAH12113.1|  361|Homo sapiens homer homolog 3 (Drosop...    30   8.3  
AF093265-1|AAC71029.1|  358|Homo sapiens homer-3 protein.              30   8.3  
AC002985-3|AAB81545.1|  374|Homo sapiens R27090_3 protein.             30   8.3  

>Y18896-1|CAB75545.1|  121|Homo sapiens Homer-3D protein protein.
          Length = 121

 Score = 29.9 bits (64), Expect = 8.3
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +1

Query: 178 YGVGFIIKQHLKQYVEEFIGISERIAL 258
           YG+GF  +QHL Q+ E+F  + E   L
Sbjct: 89  YGLGFASEQHLTQFAEKFQEVKEAARL 115


>Y18895-1|CAB75544.1|  145|Homo sapiens Homer-3C protein protein.
          Length = 145

 Score = 29.9 bits (64), Expect = 8.3
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +1

Query: 178 YGVGFIIKQHLKQYVEEFIGISERIAL 258
           YG+GF  +QHL Q+ E+F  + E   L
Sbjct: 89  YGLGFASEQHLTQFAEKFQEVKEAARL 115


>Y17573-1|CAB75536.1|  361|Homo sapiens HOMER-3A (flip) protein
           protein.
          Length = 361

 Score = 29.9 bits (64), Expect = 8.3
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +1

Query: 178 YGVGFIIKQHLKQYVEEFIGISERIAL 258
           YG+GF  +QHL Q+ E+F  + E   L
Sbjct: 89  YGLGFASEQHLTQFAEKFQEVKEAARL 115


>BC012113-1|AAH12113.1|  361|Homo sapiens homer homolog 3
           (Drosophila) protein.
          Length = 361

 Score = 29.9 bits (64), Expect = 8.3
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +1

Query: 178 YGVGFIIKQHLKQYVEEFIGISERIAL 258
           YG+GF  +QHL Q+ E+F  + E   L
Sbjct: 89  YGLGFASEQHLTQFAEKFQEVKEAARL 115


>AF093265-1|AAC71029.1|  358|Homo sapiens homer-3 protein.
          Length = 358

 Score = 29.9 bits (64), Expect = 8.3
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +1

Query: 178 YGVGFIIKQHLKQYVEEFIGISERIAL 258
           YG+GF  +QHL Q+ E+F  + E   L
Sbjct: 89  YGLGFASEQHLTQFAEKFQEVKEAARL 115


>AC002985-3|AAB81545.1|  374|Homo sapiens R27090_3 protein.
          Length = 374

 Score = 29.9 bits (64), Expect = 8.3
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +1

Query: 178 YGVGFIIKQHLKQYVEEFIGISERIAL 258
           YG+GF  +QHL Q+ E+F  + E   L
Sbjct: 89  YGLGFASEQHLTQFAEKFQEVKEAARL 115


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 99,761,435
Number of Sequences: 237096
Number of extensions: 2157341
Number of successful extensions: 7766
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7662
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7765
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7366354010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)