Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40376
         (656 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    25   0.84 
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    22   4.5  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    22   4.5  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    22   5.9  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    22   5.9  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    22   5.9  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          21   7.8  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      21   7.8  
AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    21   7.8  

>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 24.6 bits (51), Expect = 0.84
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = +1

Query: 49  ELTYALKSIKWDIIGLSEVRRMGESITCHPDY 144
           +LT    S++WDII +  VR     I C   Y
Sbjct: 192 DLTDYYISVEWDIIKVPAVRNEAFYICCEEPY 223


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = +3

Query: 267 NLPGYKKPWSIVQIYSPTEQSN 332
           NL   +KPWS + I   T+  N
Sbjct: 85  NLQANEKPWSTLPIEDLTKSDN 106


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = +3

Query: 267 NLPGYKKPWSIVQIYSPTEQSN 332
           NL   +KPWS + I   T+  N
Sbjct: 123 NLQANEKPWSTLPIEDLTKSDN 144


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 10/33 (30%), Positives = 16/33 (48%)
 Frame = +1

Query: 49  ELTYALKSIKWDIIGLSEVRRMGESITCHPDYL 147
           +L+    S++WDI+ +  VR       C   YL
Sbjct: 200 DLSEFYMSVEWDILEVPAVRNEKFYTCCDEPYL 232


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 10/33 (30%), Positives = 16/33 (48%)
 Frame = +1

Query: 49  ELTYALKSIKWDIIGLSEVRRMGESITCHPDYL 147
           +L+    S++WDI+ +  VR       C   YL
Sbjct: 200 DLSEFYMSVEWDILEVPAVRNEKFYTCCDEPYL 232


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 10/33 (30%), Positives = 16/33 (48%)
 Frame = +1

Query: 49  ELTYALKSIKWDIIGLSEVRRMGESITCHPDYL 147
           +L+    S++WDI+ +  VR       C   YL
Sbjct: 196 DLSEFYTSVEWDILEVPAVRNEKFYTCCDEPYL 228


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = +2

Query: 374 HSRAYAQKPYSHGRLQWPN 430
           HS    QKPY+   + +PN
Sbjct: 430 HSYKMHQKPYNKDEIIYPN 448


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = +2

Query: 374 HSRAYAQKPYSHGRLQWPN 430
           HS    QKPY+   + +PN
Sbjct: 430 HSYKMHQKPYNKDEIIYPN 448


>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = -3

Query: 555 VFKIVNLFSSAKFVIFPHFCFWSCYYMNI 469
           VFKI  LF    +      C+ + YY+ I
Sbjct: 52  VFKIAPLFKGIGYAAAVMSCWMNVYYIVI 80


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 195,903
Number of Sequences: 438
Number of extensions: 4545
Number of successful extensions: 18
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19734030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)