Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40375
         (658 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q4YBM6 Cluster: Putative uncharacterized protein; n=6; ...    33   8.0  

>UniRef50_Q4YBM6 Cluster: Putative uncharacterized protein; n=6;
            Plasmodium (Vinckeia)|Rep: Putative uncharacterized
            protein - Plasmodium berghei
          Length = 1594

 Score = 32.7 bits (71), Expect = 8.0
 Identities = 42/156 (26%), Positives = 67/156 (42%), Gaps = 11/156 (7%)
 Frame = -3

Query: 488  NEYKV-VKFYIKCLHYLKISRFNILNLKIAT*ARYLYFTKVIH-------ACGCVVRNRF 333
            NEY      Y   L Y+K  ++NI  +K+ T    LYFT + H       A    + N +
Sbjct: 985  NEYSYHYNSYNNYLDYIKGIKYNIYKIKLPTLFFDLYFTTIAHYMYMNYNAFVIGIINEY 1044

Query: 332  HEISLPVIMIYVERNSK*DPL*VHFKN*LMSSIVNHLTSVLFDIMYNYESFH-KIQDERC 156
             EI L  I  Y+ +N     + +  K  ++  I N + S+ FD   N ES   KI  ++ 
Sbjct: 1045 SEIKLNPIN-YIYKNEDVQFILLTDKYNILQKIQN-IKSIQFDWNNNIESIKIKINKQKD 1102

Query: 155  DY*NCIRNYCTRRVPYA--NYLLFAKIMKCN*TVKF 54
                   N   + +  +  NY    K +KC+ + K+
Sbjct: 1103 AKKKLDSNITNKSIDKSCNNYYNNIKKLKCDSSGKY 1138


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 552,222,647
Number of Sequences: 1657284
Number of extensions: 10006971
Number of successful extensions: 18413
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 17882
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18404
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 49586781480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)