Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40375
         (658 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_29194| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.4  
SB_17728| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.0032)         29   4.4  
SB_20049| Best HMM Match : 7tm_1 (HMM E-Value=6.2e-05)                 28   5.8  
SB_38983| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.7  

>SB_29194| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2916

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = -3

Query: 233 VNHLTSVLFDIMYNYESFHKIQDERCDY*NCIRNYCT 123
           VN L++   ++M   E    +Q E+C   NC++  CT
Sbjct: 320 VNLLSASTLELMEELEHSQGVQKEQCFEINCLKKVCT 356


>SB_17728| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.0032)
          Length = 1293

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = -3

Query: 233 VNHLTSVLFDIMYNYESFHKIQDERCDY*NCIRNYCT 123
           VN L++   ++M   E    +Q E+C   NC++  CT
Sbjct: 268 VNLLSASTLELMEELEHSQGVQKEQCFEINCLKKVCT 304


>SB_20049| Best HMM Match : 7tm_1 (HMM E-Value=6.2e-05)
          Length = 1023

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 13/26 (50%), Positives = 18/26 (69%)
 Frame = -2

Query: 399 VSKIFVLYESYPCMRLCRPKSFPRNI 322
           +S+ F +  SYP +   RP+SFPRNI
Sbjct: 691 LSRGFQISTSYPKISPDRPQSFPRNI 716


>SB_38983| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 111

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 12/44 (27%), Positives = 24/44 (54%)
 Frame = +1

Query: 313 TGRDISWKRFRTTQPHAWITFVKYKYLAHVAILRFSILKREIFK 444
           TG+ +S     ++ P  +  F+K + +  V +L+  + K +IFK
Sbjct: 17  TGKSLSEFLIVSSTPPIYYYFIKLQQVLQVQVLKTRVFKEDIFK 60


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,398,368
Number of Sequences: 59808
Number of extensions: 327609
Number of successful extensions: 640
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 598
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 640
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1681430875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)