Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40372
         (685 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF067945-13|AAC17676.2|  308|Caenorhabditis elegans Serpentine r...    33   0.25 
Z81047-14|CAH04642.1|  357|Caenorhabditis elegans Hypothetical p...    28   7.1  
Z74034-1|CAA98479.1|  313|Caenorhabditis elegans Hypothetical pr...    28   7.1  

>AF067945-13|AAC17676.2|  308|Caenorhabditis elegans Serpentine
           receptor, class x protein59 protein.
          Length = 308

 Score = 32.7 bits (71), Expect = 0.25
 Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = +2

Query: 341 RNSNIFIYFVFVFLLSYSFEFKLKYCS-SYSIKT 439
           RN+ I I+ +F+  L +SF F    CS  Y++KT
Sbjct: 120 RNTKIIIFLIFILTLGFSFSFYEVLCSLEYNLKT 153


>Z81047-14|CAH04642.1|  357|Caenorhabditis elegans Hypothetical
           protein C41G6.16 protein.
          Length = 357

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 3/35 (8%)
 Frame = -1

Query: 316 YTIAFL*HRSSENSIQLNFLT---AYITKYPNVIL 221
           Y    L H S + +I LNFL     Y  KYPN+I+
Sbjct: 20  YYSFLLCHHSKDYAIHLNFLNFDVEYAIKYPNLII 54


>Z74034-1|CAA98479.1|  313|Caenorhabditis elegans Hypothetical
           protein F43A11.1 protein.
          Length = 313

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 13/44 (29%), Positives = 24/44 (54%)
 Frame = +2

Query: 308 YSIIIIMNKITRNSNIFIYFVFVFLLSYSFEFKLKYCSSYSIKT 439
           + +I+I+N IT    +  Y   ++L+  +F FKL   S + + T
Sbjct: 195 FIVILILNSITLIKILHFYKDSLYLIDLTFTFKLSSWSDHRVWT 238


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,833,200
Number of Sequences: 27780
Number of extensions: 230432
Number of successful extensions: 473
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 468
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 473
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1560745544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)