Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40370
         (556 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_02_0016 - 11805853-11806232,11806565-11806610                       29   1.9  
11_05_0068 - 18782658-18782984,18784634-18784783,18784853-187857...    29   2.5  
04_04_0686 - 27249140-27249220,27249387-27249480,27249922-272499...    29   3.3  
12_01_0677 - 5774633-5774645,5774713-5775062                           28   5.8  
01_06_1021 - 33883594-33884583                                         28   5.8  

>07_02_0016 - 11805853-11806232,11806565-11806610
          Length = 141

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 13/42 (30%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
 Frame = +2

Query: 50  EAIESNQ-GLCTWRATKVITIQVSELIEDVDNTHIDEENNSL 172
           E +++ Q G+CT   T+++T Q+S L++ +DN   D +  ++
Sbjct: 57  ERLQTRQRGMCTIERTEMLTAQLSLLMKRLDNNEKDAKQGTV 98


>11_05_0068 -
           18782658-18782984,18784634-18784783,18784853-18785716,
           18785877-18786005,18786112-18786188,18786507-18786607,
           18786772-18786896
          Length = 590

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 4/74 (5%)
 Frame = +1

Query: 247 INGITI---LNNSGQMHYINKWIVLNKKKDSQINLTPILTKPWRLYPQQ-KFTLTITCRP 414
           IN  T+   LNN    HYI++WI    +  +   LT  L+  W  +P+  K++   +   
Sbjct: 217 INSFTLKRNLNNHKYAHYIDRWIYFAVRSGAN-ELTIDLSPRWYAHPRDVKYSFPSSNVA 275

Query: 415 KFLGKTREHIKILF 456
                + EH+K+ F
Sbjct: 276 APEPTSIEHLKLCF 289


>04_04_0686 -
           27249140-27249220,27249387-27249480,27249922-27249987,
           27250068-27250158,27250378-27250460,27250565-27250633,
           27250971-27251038,27251118-27251204,27252998-27253069,
           27253469-27253527,27253663-27253780,27254411-27254466,
           27254892-27254937,27255011-27255052,27255837-27255922,
           27256039-27256087
          Length = 388

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = -3

Query: 371 SLQGFVKIGVRFICESFFLLRTIHLLM*CIWPLLFKIVIPLIL 243
           +LQ  +   V F C+   LL TI L +  +  LL + ++P IL
Sbjct: 148 TLQALIVAAVIFRCDMILLLGTIGLALLLVGALLDRRIVPYIL 190


>12_01_0677 - 5774633-5774645,5774713-5775062
          Length = 120

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = -2

Query: 153 SMCVLSTSSINSLTCIVITLVALHVHNP*LLSIASNITLFPFC 25
           S C  ST +I  L C+ ++L+ L +  P L    + + L P C
Sbjct: 52  SRCYFSTEAILVLACVTVSLLVLPLILPPLPPPPTLLLLLPVC 94


>01_06_1021 - 33883594-33884583
          Length = 329

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
 Frame = -2

Query: 177 IIKLLFSSSMCVLSTSSINSLTCIVITLVALHVHNP*LLSIASNIT-LFPFCG 22
           ++ LLF+ S    S   +  L  +V   +A+HV+   L  +AS I+ L P CG
Sbjct: 153 LLLLLFAPSSSPPSLPFVLILVVVVFVFLAIHVYISALWHLASVISVLEPLCG 205


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,989,568
Number of Sequences: 37544
Number of extensions: 226808
Number of successful extensions: 418
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 408
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 418
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1257681096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)