Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40370
         (556 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY578810-1|AAT07315.1|  897|Anopheles gambiae smurf protein.           25   1.7  
M93689-1|AAA29368.1|  442|Anopheles gambiae protein ( Anopheles ...    23   5.1  
AY753539-1|AAV28542.1| 3318|Anopheles gambiae SGS2 protein.            23   5.1  

>AY578810-1|AAT07315.1|  897|Anopheles gambiae smurf protein.
          Length = 897

 Score = 25.0 bits (52), Expect = 1.7
 Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
 Frame = -2

Query: 540 LSPLMWAFLF-KTDHYHLNINIPIYLKPFK*NFYMFP 433
           L+P    F + + DHY L IN   YLK  K   + FP
Sbjct: 548 LNPQYGLFQYSRDDHYSLQINPDSYLKQRK-TIHFFP 583


>M93689-1|AAA29368.1|  442|Anopheles gambiae protein ( Anopheles
           gambiae T1 retroposon. ).
          Length = 442

 Score = 23.4 bits (48), Expect = 5.1
 Identities = 14/47 (29%), Positives = 19/47 (40%), Gaps = 4/47 (8%)
 Frame = -2

Query: 204 VTLICCSCS----IIKLLFSSSMCVLSTSSINSLTCIVITLVALHVH 76
           V L  CSC      +  +   S C   T S NS++C  +     H H
Sbjct: 17  VWLRSCSCHSSVCAVSFVMQCSTCNAPTDSANSVSCAGVCGSKHHTH 63


>AY753539-1|AAV28542.1| 3318|Anopheles gambiae SGS2 protein.
          Length = 3318

 Score = 23.4 bits (48), Expect = 5.1
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +3

Query: 300  VDCSQ*EKGLTNKSYAYFN 356
            +DCSQ    +T+KSY   N
Sbjct: 3016 IDCSQDASSITSKSYKVTN 3034


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 548,400
Number of Sequences: 2352
Number of extensions: 9541
Number of successful extensions: 15
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 563,979
effective HSP length: 61
effective length of database: 420,507
effective search space used: 51722361
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)