Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40368
(659 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC887.09c |||leucine-rich repeat protein Sog2 |Schizosaccharom... 40 4e-04
SPCC31H12.08c |ccr4|SPCC5E4.02c|CCR4-Not complex subunit Ccr4 |S... 34 0.021
SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom... 30 0.34
SPCC622.13c |||conserved eukaryotic protein|Schizosaccharomyces ... 28 1.4
SPCC1739.11c |cdc11||SIN component scaffold protein Cdc11|Schizo... 26 5.5
SPAP14E8.02 |||transcription factor |Schizosaccharomyces pombe|c... 26 5.5
SPAC227.18 |lys3|SPAC2F7.01|saccharopine dehydrogenase [NAD+, L-... 25 7.3
SPBC16A3.17c |||membrane transporter|Schizosaccharomyces pombe|c... 25 7.3
SPAC926.06c |||leucine-rich repeat protein, unknown|Schizosaccha... 25 7.3
SPAC4A8.12c |sds22||protein phosphatase regulatory subunit Sds22... 25 9.7
>SPBC887.09c |||leucine-rich repeat protein Sog2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 886
Score = 39.5 bits (88), Expect = 4e-04
Identities = 21/58 (36%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Frame = +3
Query: 255 SYEIILLYNNRIQSLPNFLNRFCNLKILNVSNNRLTVLPDVFKNCP-LTTLVAKHNQL 425
S EI+ + N+I+ LP NLK+L++S NRL LP + P L L ++N +
Sbjct: 99 SLEILDISRNKIKQLPESFGALMNLKVLSISKNRLFELPTYIAHMPNLEILKIENNHI 156
Score = 38.3 bits (85), Expect = 0.001
Identities = 17/48 (35%), Positives = 27/48 (56%)
Frame = +2
Query: 509 FPEQIFELTHLKYLYLGSNKIVNIPKDIWELSGLQILSLGGNQIIECP 652
FPE + L L+ L + NKI +P+ L L++LS+ N++ E P
Sbjct: 90 FPESLCRLESLEILDISRNKIKQLPESFGALMNLKVLSISKNRLFELP 137
Score = 30.3 bits (65), Expect = 0.26
Identities = 12/42 (28%), Positives = 22/42 (52%)
Frame = +3
Query: 261 EIILLYNNRIQSLPNFLNRFCNLKILNVSNNRLTVLPDVFKN 386
+++ + NR+ LP ++ NL+IL + NN + P N
Sbjct: 124 KVLSISKNRLFELPTYIAHMPNLEILKIENNHIVFPPPHIAN 165
>SPCC31H12.08c |ccr4|SPCC5E4.02c|CCR4-Not complex subunit Ccr4
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 690
Score = 33.9 bits (74), Expect = 0.021
Identities = 15/44 (34%), Positives = 23/44 (52%)
Frame = +2
Query: 521 IFELTHLKYLYLGSNKIVNIPKDIWELSGLQILSLGGNQIIECP 652
+F+ + L LY+ N + +P +I +L L IL GN I P
Sbjct: 177 LFKFSFLTELYINHNNLTRLPPEIGKLKNLVILDASGNSIKTIP 220
Score = 26.6 bits (56), Expect = 3.2
Identities = 20/47 (42%), Positives = 23/47 (48%)
Frame = +3
Query: 363 VLPDVFKNCPLTTLVAKHNQLTNESLPKSFYTAKNTLRELNLSGNQL 503
V D+FK LT L HN LT LP KN L L+ SGN +
Sbjct: 173 VSTDLFKFSFLTELYINHNNLTR--LPPEIGKLKN-LVILDASGNSI 216
>SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1692
Score = 29.9 bits (64), Expect = 0.34
Identities = 17/43 (39%), Positives = 20/43 (46%)
Frame = +2
Query: 506 FFPEQIFELTHLKYLYLGSNKIVNIPKDIWELSGLQILSLGGN 634
F P L +L YL L N V P I ELS L+ L+ N
Sbjct: 516 FLPHSTRYLVNLTYLDLSYNNFVTFPLIITELSQLETLNFSHN 558
Score = 27.1 bits (57), Expect = 2.4
Identities = 22/77 (28%), Positives = 32/77 (41%), Gaps = 2/77 (2%)
Frame = +3
Query: 279 NNRIQSLPNFLNRFCNLKILNVSNNRLTVLPDVFKN-CPLTTLVAKHNQLTN-ESLPKSF 452
NN++ LP+ NL L++S N P + L TL HN L+ S S
Sbjct: 511 NNKLFFLPHSTRYLVNLTYLDLSYNNFVTFPLIITELSQLETLNFSHNLLSQISSKIGSL 570
Query: 453 YTAKNTLRELNLSGNQL 503
K+ + N N+L
Sbjct: 571 VKLKHLYLQFNDLSNRL 587
Score = 25.8 bits (54), Expect = 5.5
Identities = 22/67 (32%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
Frame = +3
Query: 324 NLKILNVSNNRLTVLPDVFKN-CPLTTLVAKHNQLTNESLPKSFYTAKNTLRELNLSGNQ 500
+LK LN++NN+L LP + LT L +N L T + L LN S N
Sbjct: 503 SLKELNIANNKLFFLPHSTRYLVNLTYLDLSYNNFVTFPL---IITELSQLETLNFSHNL 559
Query: 501 LNFSQSR 521
L+ S+
Sbjct: 560 LSQISSK 566
>SPCC622.13c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1098
Score = 27.9 bits (59), Expect = 1.4
Identities = 19/77 (24%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
Frame = +3
Query: 288 IQSLPNFLNRFCNLKILNVSNNRLTVLPDVFKNCPLTTLVAK--HNQLTNESLPKSFYTA 461
++S+ +N+ N K+ + N+L L + F N + +++ + ++ T S +F +
Sbjct: 334 LESMLKLINKKENPKLRDYGMNKLVSLIESFNNITMESVLTECLNDWSTTWSSVSTFASE 393
Query: 462 KNTLRELNLSGNQLNFS 512
N L ELN + L+ S
Sbjct: 394 DNKLEELNRLKSLLSIS 410
>SPCC1739.11c |cdc11||SIN component scaffold protein
Cdc11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1045
Score = 25.8 bits (54), Expect = 5.5
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +3
Query: 267 ILLYNNRIQSLPNFLNRFCNLKILNVSNNRLTVL 368
+ L NRI+ + N + NLK LNV + R+ L
Sbjct: 918 LYLVGNRIKKMRNLCDILANLKQLNVLDLRMNPL 951
Score = 25.0 bits (52), Expect = 9.7
Identities = 15/51 (29%), Positives = 25/51 (49%)
Frame = +3
Query: 279 NNRIQSLPNFLNRFCNLKILNVSNNRLTVLPDVFKNCPLTTLVAKHNQLTN 431
NNRI+ L + L+ L + NN + + ++ L L +N+LTN
Sbjct: 721 NNRIKELSFTNSNLHRLEELLLGNNEIEEIEEISSLQNLMVLQLDNNKLTN 771
>SPAP14E8.02 |||transcription factor |Schizosaccharomyces pombe|chr
1|||Manual
Length = 566
Score = 25.8 bits (54), Expect = 5.5
Identities = 16/60 (26%), Positives = 23/60 (38%)
Frame = +3
Query: 324 NLKILNVSNNRLTVLPDVFKNCPLTTLVAKHNQLTNESLPKSFYTAKNTLRELNLSGNQL 503
NL N NR + P + PL N+ YT ++ +LNL N+L
Sbjct: 184 NLNAKNYEENREPMSPSPQEALPLMPSSPPSQDYQNDQNHLILYTNSESIPKLNLRSNEL 243
>SPAC227.18 |lys3|SPAC2F7.01|saccharopine dehydrogenase [NAD+,
L-lysine forming] |Schizosaccharomyces pombe|chr
1|||Manual
Length = 368
Score = 25.4 bits (53), Expect = 7.3
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = +3
Query: 315 RFCNLKILNVSNNRLTVLPDV 377
+FC ++ LNV N +L V+ DV
Sbjct: 258 KFCTVESLNVPNRKLRVVCDV 278
>SPBC16A3.17c |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 599
Score = 25.4 bits (53), Expect = 7.3
Identities = 8/20 (40%), Positives = 16/20 (80%)
Frame = -3
Query: 294 IVFCCCTVILSRSFSTIFFI 235
+++ CTV+++ F++IFFI
Sbjct: 552 VIWIFCTVVMAIGFASIFFI 571
>SPAC926.06c |||leucine-rich repeat protein,
unknown|Schizosaccharomyces pombe|chr 1|||Manual
Length = 621
Score = 25.4 bits (53), Expect = 7.3
Identities = 10/24 (41%), Positives = 18/24 (75%)
Frame = +3
Query: 432 ESLPKSFYTAKNTLRELNLSGNQL 503
+S+PK+ + + +L L+LSGN+L
Sbjct: 345 KSIPKNVFLSLQSLVSLDLSGNEL 368
>SPAC4A8.12c |sds22||protein phosphatase regulatory subunit Sds22
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 332
Score = 25.0 bits (52), Expect = 9.7
Identities = 18/60 (30%), Positives = 29/60 (48%)
Frame = +3
Query: 324 NLKILNVSNNRLTVLPDVFKNCPLTTLVAKHNQLTNESLPKSFYTAKNTLRELNLSGNQL 503
NL+IL+VSNN + L + L L A +N+L++ + + L + GN L
Sbjct: 238 NLEILDVSNNMIKHLSYLAGLKNLVELWASNNELSSFQEIEDELSGLKKLETVYFEGNPL 297
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,606,826
Number of Sequences: 5004
Number of extensions: 51390
Number of successful extensions: 157
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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