Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40368
         (659 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    30   0.017
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    22   4.5  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    22   4.5  
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    22   4.5  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   4.5  
AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    22   6.0  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 30.3 bits (65), Expect = 0.017
 Identities = 26/83 (31%), Positives = 40/83 (48%), Gaps = 2/83 (2%)
 Frame = +3

Query: 261 EIILLYNNRIQSLPNFLNRFCNLKILNVSNNRLTVLPD-VFKNC-PLTTLVAKHNQLTNE 434
           E+ L  N  ++   + L     L+  N S N L  LP+ +F +   L  +   +N L + 
Sbjct: 241 ELHLQRNAIVEIAGDALTGLTVLRTFNASYNSLDSLPEGLFASTRDLREIHLAYNGLRD- 299

Query: 435 SLPKSFYTAKNTLRELNLSGNQL 503
            LPK  +T    L  LNL+GN+L
Sbjct: 300 -LPKGIFTRLEQLLVLNLAGNRL 321



 Score = 27.5 bits (58), Expect = 0.12
 Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = +2

Query: 506 FFPEQIFELTHLKYLYLGSNKIVNIPKD-IWELSGLQILSLGGNQI 640
           F+      L  L  L L  N I N+ +  +W+L  LQIL+L  N++
Sbjct: 469 FYNGSFRNLDQLTGLRLIGNDIGNLSRGMLWDLPNLQILNLARNKV 514



 Score = 25.4 bits (53), Expect = 0.48
 Identities = 27/97 (27%), Positives = 45/97 (46%), Gaps = 2/97 (2%)
 Frame = +3

Query: 243 RLC*SYEIILLYNNRIQSLPNFLNRFCNLKILNVSNNRLT-VLPDVFKNC-PLTTLVAKH 416
           R C   + + L  N + S+P+ L     LK L++  NR++      F+N   LT L    
Sbjct: 428 RNCSDLKELDLSGNELTSVPDALRDLALLKTLDLGENRISNFYNGSFRNLDQLTGLRLIG 487

Query: 417 NQLTNESLPKSFYTAKNTLRELNLSGNQLNFSQSRYS 527
           N + N  L +        L+ LNL+ N++   + RY+
Sbjct: 488 NDIGN--LSRGMLWDLPNLQILNLARNKVQHVE-RYA 521


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 6/23 (26%), Positives = 14/23 (60%)
 Frame = +3

Query: 369 PDVFKNCPLTTLVAKHNQLTNES 437
           P++ K+C     +A+H ++  +S
Sbjct: 482 PEIHKSCICVRFIAEHTKMLEDS 504


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 6/23 (26%), Positives = 14/23 (60%)
 Frame = +3

Query: 369 PDVFKNCPLTTLVAKHNQLTNES 437
           P++ K+C     +A+H ++  +S
Sbjct: 482 PEIHKSCICVRFIAEHTKMLEDS 504


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
 Frame = +2

Query: 494 KSVKFFPEQIFELTHLKYLYLGSNKIVNIPK-DI-WELSGLQILSLGGNQIIECPR 655
           K +K     I+E  + +Y+++ SNK   I   D+ +     +IL+   NQ+I   R
Sbjct: 355 KIIKQISSNIYERQNNEYIWIVSNKYQKIANGDLNFNEVNFRILNAPVNQLIRYTR 410


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = +2

Query: 278  QQQNTITSKFPKQVLQLENFECEQQQ 355
            QQQ  +T++  K +LQ  N + +  Q
Sbjct: 986  QQQTIVTNQAGKSILQTANIKQQSPQ 1011


>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 11/29 (37%), Positives = 13/29 (44%)
 Frame = +3

Query: 348 NNRLTVLPDVFKNCPLTTLVAKHNQLTNE 434
           N+RL + P    NC L  L    N L  E
Sbjct: 208 NSRLALKPKDVSNCVLFALQTPDNVLIKE 236


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 173,449
Number of Sequences: 438
Number of extensions: 3161
Number of successful extensions: 12
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19855845
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)