Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40367
         (625 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q2N6D7 Cluster: O-antigen translocase; n=1; Erythrobact...    35   1.4  
UniRef50_Q2HWK2 Cluster: Capsid proteins; n=1; Rhizosolenia seti...    33   5.6  
UniRef50_Q7VK34 Cluster: Ni/Fe hydrogenase cytochrome b subunit;...    32   9.7  
UniRef50_A3J687 Cluster: Putative uncharacterized protein; n=1; ...    32   9.7  

>UniRef50_Q2N6D7 Cluster: O-antigen translocase; n=1; Erythrobacter
           litoralis HTCC2594|Rep: O-antigen translocase -
           Erythrobacter litoralis (strain HTCC2594)
          Length = 432

 Score = 35.1 bits (77), Expect = 1.4
 Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 3/56 (5%)
 Frame = +3

Query: 408 FHQSTTKNC-IQRLERNKHFKTLNSLLALCFSSV--LVLLDPSIFVRFFGDRWRYS 566
           + Q+ T+    QR  R    KTL++L AL    +  L+++ P +F   FGD WR S
Sbjct: 285 YRQNATETYRAQRSFRALFLKTLSALTALVILPIAALIIIAPDLFAFIFGDEWRVS 340


>UniRef50_Q2HWK2 Cluster: Capsid proteins; n=1; Rhizosolenia
           setigera RNA virus|Rep: Capsid proteins - Rhizosolenia
           setigera RNA virus
          Length = 960

 Score = 33.1 bits (72), Expect = 5.6
 Identities = 12/37 (32%), Positives = 23/37 (62%)
 Frame = +3

Query: 498 SSVLVLLDPSIFVRFFGDRWRYSYRSNIIITYPCNRI 608
           ++++  L P+   R  G RW+Y++ SN++   PC R+
Sbjct: 787 TTLMNYLTPAFAARRGGIRWKYNFNSNVLNQAPCGRM 823


>UniRef50_Q7VK34 Cluster: Ni/Fe hydrogenase cytochrome b subunit;
           n=1; Helicobacter hepaticus|Rep: Ni/Fe hydrogenase
           cytochrome b subunit - Helicobacter hepaticus
          Length = 254

 Score = 32.3 bits (70), Expect = 9.7
 Identities = 17/51 (33%), Positives = 25/51 (49%)
 Frame = -2

Query: 168 FIRASNRYIGTYTLIKRIPIYQGIQPNILCKRVFSY*LFLYSPHIYGTYTP 16
           F R    +    +L +RI + Q +QP I   ++ +Y      PHI GTY P
Sbjct: 102 FFRIYLFFFDKKSLPERISLNQALQPKIWIAQIKTYMFIGNHPHIDGTYNP 152


>UniRef50_A3J687 Cluster: Putative uncharacterized protein; n=1;
           Flavobacteria bacterium BAL38|Rep: Putative
           uncharacterized protein - Flavobacteria bacterium BAL38
          Length = 371

 Score = 32.3 bits (70), Expect = 9.7
 Identities = 15/35 (42%), Positives = 21/35 (60%)
 Frame = -3

Query: 395 RTPARSNNVDTKHRVYSSTSRKRKLIGLMNFGFER 291
           RTP   NN  +++R+YSST R  + IG  N  + R
Sbjct: 226 RTPLYRNNYYSRNRIYSSTVRSNRDIGRYNKTYSR 260


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 644,120,658
Number of Sequences: 1657284
Number of extensions: 13370461
Number of successful extensions: 30667
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 29618
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30661
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 45636850930
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)