Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40367
(625 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr 1... 28 0.95
SPBC18H10.08c |ubp4||ubiquitin C-terminal hydrolase Ubp4|Schizos... 27 2.2
SPMIT.11 |cox2||cytochrome c oxidase 2|Schizosaccharomyces pombe... 27 2.9
SPAC22F8.07c |rtf1||replication termination factor Rtf1|Schizosa... 27 2.9
SPCC24B10.22 ||SPCPB16A4.01|mitochondrial DNA polymerase gamma c... 26 3.8
SPAC27E2.04c |mug155||sequence orphan|Schizosaccharomyces pombe|... 26 5.1
SPBC1348.02 |||S. pombe specific 5Tm protein family|Schizosaccha... 25 6.7
SPBPB2B2.19c |||S. pombe specific 5Tm protein family|Schizosacch... 25 6.7
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc... 25 6.7
SPAC977.01 |||S. pombe specific 5Tm protein family|Schizosacchar... 25 6.7
SPAC750.05c |||S. pombe specific 5Tm protein family|Schizosaccha... 25 6.7
SPAC26H5.12 |rpo41||mitochondrial DNA-directed RNA polymerase|Sc... 25 6.7
SPAC5D6.12 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 25 8.9
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ... 25 8.9
>SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr
1|||Manual
Length = 881
Score = 28.3 bits (60), Expect = 0.95
Identities = 13/53 (24%), Positives = 27/53 (50%)
Frame = +3
Query: 432 CIQRLERNKHFKTLNSLLALCFSSVLVLLDPSIFVRFFGDRWRYSYRSNIIIT 590
C+++ K++K + + + +L L+ P+IF FFG + + S + T
Sbjct: 390 CVKKAASWKYYKYTIDGIYIIYFDMLALIIPTIFFGFFGSQGHWFTSSVFLFT 442
>SPBC18H10.08c |ubp4||ubiquitin C-terminal hydrolase
Ubp4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 438
Score = 27.1 bits (57), Expect = 2.2
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = +2
Query: 242 KREYDILLYSHIEGVSVFRNQNSSTLLVFVFWKCSNTPCVLC 367
+ E + +SHIE R+ S + FV CS T C+ C
Sbjct: 201 REELPLSHFSHIEWNLHLRSNKSIVVNNFVGQLCSRTQCMTC 242
>SPMIT.11 |cox2||cytochrome c oxidase 2|Schizosaccharomyces
pombe|chr mitochondrial|||Manual
Length = 248
Score = 26.6 bits (56), Expect = 2.9
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 4/41 (9%)
Frame = +3
Query: 480 LLALCFSSVLVLLD----PSIFVRFFGDRWRYSYRSNIIIT 590
L+AL +L LLD PS+ V+ G +W +SY N +T
Sbjct: 91 LVALPSFKLLYLLDEVQKPSMTVKAIGRQWFWSYELNDFVT 131
>SPAC22F8.07c |rtf1||replication termination factor
Rtf1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 466
Score = 26.6 bits (56), Expect = 2.9
Identities = 10/32 (31%), Positives = 20/32 (62%), Gaps = 3/32 (9%)
Frame = +1
Query: 172 IFSREYRNWVSFFY---SRIVKTRIKETRIRY 258
+FSR+Y NW F+ S+++ +KE+ + +
Sbjct: 91 VFSRDYTNWTPTFWVLLSQLIDEFLKESELNF 122
>SPCC24B10.22 ||SPCPB16A4.01|mitochondrial DNA polymerase gamma
catalytic subunit|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1018
Score = 26.2 bits (55), Expect = 3.8
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = -2
Query: 291 TDTPSMWLYSKISYSRFLYSRFHYS 217
T T S W++S I +FLY R HYS
Sbjct: 9 TLTCSKWIHSIIKTKKFLYCR-HYS 32
>SPAC27E2.04c |mug155||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 187
Score = 25.8 bits (54), Expect = 5.1
Identities = 22/78 (28%), Positives = 39/78 (50%), Gaps = 5/78 (6%)
Frame = +3
Query: 339 SARIHPVFCVYIIATRWGSG*IKFHQSTTKNCIQRLERNKHFKTLNSLLALC----FSSV 506
+ R+ ++C I R KF +S +K I + HF + ++++ L FS +
Sbjct: 55 NCRLKEIYCRLKIRCRLKK---KFIKSLSKKII-----SYHFISFHTIVVLLLLPPFSHL 106
Query: 507 LVLLDPSIF-VRFFGDRW 557
LVL+ PS+F F+ +W
Sbjct: 107 LVLVYPSVFTTAFYHQKW 124
>SPBC1348.02 |||S. pombe specific 5Tm protein
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 344
Score = 25.4 bits (53), Expect = 6.7
Identities = 11/16 (68%), Positives = 12/16 (75%)
Frame = +2
Query: 374 YCYALGFGINKIPPKY 421
YC ALGFGI + PKY
Sbjct: 185 YC-ALGFGITRTVPKY 199
>SPBPB2B2.19c |||S. pombe specific 5Tm protein
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 344
Score = 25.4 bits (53), Expect = 6.7
Identities = 11/16 (68%), Positives = 12/16 (75%)
Frame = +2
Query: 374 YCYALGFGINKIPPKY 421
YC ALGFGI + PKY
Sbjct: 185 YC-ALGFGITRTVPKY 199
>SPAC29B12.07 |sec16||multidomain vesicle coat component
Sec16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1995
Score = 25.4 bits (53), Expect = 6.7
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = -3
Query: 422 CTLVEFYLSRTPARSNNVD 366
C L+ YL+R +SNNVD
Sbjct: 1492 CELIGNYLNRVAKKSNNVD 1510
>SPAC977.01 |||S. pombe specific 5Tm protein
family|Schizosaccharomyces pombe|chr 1||Partial|Manual
Length = 316
Score = 25.4 bits (53), Expect = 6.7
Identities = 11/16 (68%), Positives = 12/16 (75%)
Frame = +2
Query: 374 YCYALGFGINKIPPKY 421
YC ALGFGI + PKY
Sbjct: 157 YC-ALGFGITRTVPKY 171
>SPAC750.05c |||S. pombe specific 5Tm protein
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 344
Score = 25.4 bits (53), Expect = 6.7
Identities = 11/16 (68%), Positives = 12/16 (75%)
Frame = +2
Query: 374 YCYALGFGINKIPPKY 421
YC ALGFGI + PKY
Sbjct: 185 YC-ALGFGITRTVPKY 199
>SPAC26H5.12 |rpo41||mitochondrial DNA-directed RNA
polymerase|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1120
Score = 25.4 bits (53), Expect = 6.7
Identities = 16/45 (35%), Positives = 22/45 (48%)
Frame = +1
Query: 187 YRNWVSFFYSRIVKTRIKETRIRYFTVQPHRGCICLSKPKFINPI 321
YRN+ S ++T E R R TVQPH+ P FI+ +
Sbjct: 960 YRNYKSRQIRTNLQTVFIEERDRTATVQPHKQATAF-PPNFIHSL 1003
>SPAC5D6.12 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 314
Score = 25.0 bits (52), Expect = 8.9
Identities = 12/25 (48%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
Frame = -1
Query: 250 FAFPLFAFSLF-VNKKMIPNSYIRG 179
F P+ A S F KK PN+Y+RG
Sbjct: 214 FLNPMLALSFFQAVKKHSPNAYVRG 238
>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 3655
Score = 25.0 bits (52), Expect = 8.9
Identities = 14/44 (31%), Positives = 24/44 (54%)
Frame = +3
Query: 414 QSTTKNCIQRLERNKHFKTLNSLLALCFSSVLVLLDPSIFVRFF 545
+S + I L RNK K + F+++ + L+PSIF++ F
Sbjct: 572 ESLDRPAISTLPRNKDEKDCLEV----FATIFIHLEPSIFLKVF 611
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,830,124
Number of Sequences: 5004
Number of extensions: 63893
Number of successful extensions: 173
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 173
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 275671126
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -