Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40367
         (625 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1274 + 25377018-25377127,25377673-25377802,25377898-253780...    31   0.98 
03_03_0279 - 16134422-16134608,16134703-16134947,16135046-161353...    29   3.0  
10_08_0053 - 14496494-14497240,14497418-14497501,14497676-14498152     28   5.2  
11_06_0720 - 26617665-26617781,26617851-26617924,26618218-266183...    28   6.9  

>07_03_1274 +
           25377018-25377127,25377673-25377802,25377898-25378049,
           25378135-25378327,25378505-25378623,25378711-25378927,
           25379038-25379133,25379249-25379422,25379530-25379646,
           25379742-25379908,25379987-25380211,25380299-25380617,
           25380703-25380947,25381042-25381180,25381277-25381324
          Length = 816

 Score = 30.7 bits (66), Expect = 0.98
 Identities = 18/52 (34%), Positives = 25/52 (48%)
 Frame = +2

Query: 284 VSVFRNQNSSTLLVFVFWKCSNTPCVLCLHYCYALGFGINKIPPKYN*KLYS 439
           +  ++N  +S LLV  F KC   P     H+      G+ +I  KY  KLYS
Sbjct: 715 IDPYQNDKASALLVEFFEKCQEDP----NHWIKISQGGLQRIEEKYTWKLYS 762


>03_03_0279 -
           16134422-16134608,16134703-16134947,16135046-16135364,
           16135451-16135675,16135780-16135946,16136030-16136146,
           16136234-16136407,16136489-16136584,16136669-16136885,
           16137005-16137123,16137249-16137441,16137562-16137713,
           16137809-16137938,16138667-16138776
          Length = 816

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 17/52 (32%), Positives = 24/52 (46%)
 Frame = +2

Query: 284 VSVFRNQNSSTLLVFVFWKCSNTPCVLCLHYCYALGFGINKIPPKYN*KLYS 439
           +  ++   +S LLV  F KC   P     H+      G+ +I  KY  KLYS
Sbjct: 715 IDPYQGDKASALLVEFFEKCQEDPS----HWTKISQGGLQRIEEKYTWKLYS 762


>10_08_0053 - 14496494-14497240,14497418-14497501,14497676-14498152
          Length = 435

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = +2

Query: 137 VPMYRLDARMNKYLAANIGIGYH 205
           VP Y LDA M+ +     G GYH
Sbjct: 118 VPSYTLDAGMHDFAVGGSGFGYH 140


>11_06_0720 -
           26617665-26617781,26617851-26617924,26618218-26618331,
           26619375-26619399,26619564-26619620,26620273-26622888
          Length = 1000

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +3

Query: 498 SSVLVLLDPSIFVRFFGDRWRYSYRSNIII 587
           SS+   L+PS++   FGD W    R + II
Sbjct: 881 SSIDACLEPSMYNHLFGDLWSQQKRGSSII 910


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,324,189
Number of Sequences: 37544
Number of extensions: 332788
Number of successful extensions: 611
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 599
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 611
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1513903616
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)